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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps C1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-enriched-cDNA
SSR-enriched-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: C1
Map Start: 0 cM
Map Stop: 114.64 cM
Features by Type:
19 EST
2 SSR-enriched-cDNA
13 SSR-enriched-genomic
34 Total

Map Features

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Items 1 to 25 of 34.       of 2 | Next
white clover - TrZhang2007 - C1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BG178 EST 0 No other positions
RCS0690 SSR-enriched-genomic 2.74 No other positions
RCS6306 EST 8.9 white clover - TrZhang2007 - C2 RCS6306 EST 21.14 (cM) Automated name-based View Maps
RCS3862 EST 18.49 No other positions
RCS2202 SSR-enriched-genomic 20.95 white clover - TrZhang2007 - F2 RCS2202 SSR-enriched-genomic 60.77 (cM) Automated name-based View Maps
RCS4886 SSR-enriched-genomic 23.33 No other positions
RCS2317 SSR-enriched-genomic 26.51 No other positions
RCS5708 SSR-enriched-genomic 31.55 No other positions
RCS6916 EST 33.03 white clover - TrZhang2007 - C2 RCS6916 EST 25.01 (cM) Automated name-based View Maps
RCS2569 SSR-enriched-genomic 36.42 No other positions
RCS1554 SSR-enriched-genomic 37.16 No other positions
RCS1150 SSR-enriched-genomic 38.71 No other positions
RCS6954 EST 42.27 white clover - TrZhang2007 - C2 RCS6954 EST 0 (cM) Automated name-based View Maps
RCS5269 EST 47.94 No other positions
ats006 SSR-enriched-genomic 50.44 No other positions
RCS5503 SSR-enriched-genomic 52.14 No other positions
BE73 EST 54.03 white clover - TrZhang2007 - C2 BE73 EST 58.63 (cM) Automated name-based View Maps
white clover - TrZhang2007 - G1 BE73 EST 68.67 (cM) Automated name-based View Maps
RCS1080 SSR-enriched-genomic 58.53 white clover - TrZhang2007 - H1 RCS1080 SSR-enriched-genomic 30.36 (cM) Automated name-based View Maps
prs433 EST 59.63 No other positions
TRSSRA04B06 SSR-enriched-genomic 63.37 No other positions
RCS6995 EST 66.06 white clover - TrZhang2007 - C2 RCS6995 EST 82.68 (cM) Automated name-based View Maps
BE74 EST 69.86 No other positions
RCS5724 SSR-enriched-genomic 70.1 No other positions
AW212 EST 71.58 white clover - TrZhang2007 - C2 AW212 EST 87.41 (cM) Automated name-based View Maps
RCS6730 EST 72.32 No other positions