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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps E1
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-BAC
SSR-enriched-cDNA
SSR-enriched-genomic
SSR-methyl-filtrated-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: E1
Map Start: 0 cM
Map Stop: 140.17 cM
Features by Type:
13 EST
1 SSR-BAC
7 SSR-enriched-cDNA
19 SSR-enriched-genomic
1 SSR-methyl-filtrated-genomic
41 Total

Map Features

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Items 1 to 25 of 41.       of 2 | Next
white clover - TrZhang2007 - E1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AL120 EST 11.18 white clover - TrZhang2007 - E2 AL120 EST 31.48 (cM) Automated name-based View Maps
TRSSRB01A07 SSR-enriched-genomic 16.78 No other positions
AW350 EST 26.76 white clover - TrZhang2007 - E2 AW350 EST 21.04 (cM) Automated name-based View Maps
ats123 SSR-enriched-genomic 32.64 No other positions
MTIC19 EST 43.09 No other positions
RCS1704 SSR-enriched-cDNA 50.27 white clover - TrZhang2007 - E2 RCS1704 SSR-enriched-cDNA 65.75 (cM) Automated name-based View Maps
RCS2507 SSR-enriched-cDNA 54.02 No other positions
RCS2499 SSR-enriched-cDNA 56.72 white clover - TrZhang2007 - F2 RCS2499 SSR-enriched-cDNA 18.82 (cM) Automated name-based View Maps
Mt1A05 SSR-BAC 63.76 No other positions
TRSSRA04D11 SSR-enriched-genomic 68.74 No other positions
TRSSRB03C01 SSR-enriched-genomic 71.18 white clover - TrZhang2007 - A1 TRSSRB03C01 SSR-enriched-genomic 69.16 (cM) Automated name-based View Maps
RCS5799 SSR-enriched-genomic 85.05 No other positions
BE127 EST 91.1 No other positions
BF243 EST 93.81 No other positions
TRSSRA06B04 SSR-enriched-genomic 105.29 No other positions
RCS5576 SSR-enriched-genomic 110.58 white clover - TrZhang2007 - C2 RCS5576 SSR-enriched-genomic 33.72 (cM) Automated name-based View Maps
AL137 EST 117.7 No other positions
RCS1447 SSR-enriched-cDNA 119.65 No other positions
TRSSRAXX34 SSR-enriched-genomic 126.61 No other positions
BE103 EST 137.87 No other positions
RCS1206 SSR-enriched-cDNA 0 white clover - TrZhang2007 - E2 RCS1206 SSR-enriched-cDNA 36.2 (cM) Automated name-based View Maps
ats073 SSR-enriched-genomic 15.66 No other positions
TRSSRA02B09 SSR-enriched-genomic 22.45 No other positions
AW199 EST 31.01 white clover - TrZhang2007 - E2 AW199 EST 28.22 (cM) Automated name-based View Maps
TRSSRAXX31 SSR-enriched-genomic 39.71 No other positions