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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps E2
Start
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-enriched-cDNA
SSR-enriched-genomic
SSR-methyl-filtrated-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: E2
Map Start: 0 cM
Map Stop: 120.46 cM
Features by Type:
10 EST
3 SSR-enriched-cDNA
9 SSR-enriched-genomic
1 SSR-methyl-filtrated-genomic
23 Total

Map Features

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Items 1 to 23 of 23.
white clover - TrZhang2007 - E2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BG292 EST 0 No other positions
BG268 EST 16.56 No other positions
AW199 EST 28.22 white clover - TrZhang2007 - E1 AW199 EST 31.01 (cM) Automated name-based View Maps
RCS1206 SSR-enriched-cDNA 36.2 white clover - TrZhang2007 - E1 RCS1206 SSR-enriched-cDNA 0 (cM) Automated name-based View Maps
TRSSRB01C08 SSR-enriched-genomic 45.51 white clover - TrZhang2007 - A2 TRSSRB01C08 SSR-enriched-genomic 1.72 (cM) Automated name-based View Maps
TRSSRA05B06 SSR-enriched-genomic 50.25 white clover - TrZhang2007 - B1 TRSSRA05B06 SSR-enriched-genomic 127.27 (cM) Automated name-based View Maps
RCS1704 SSR-enriched-cDNA 65.75 white clover - TrZhang2007 - E1 RCS1704 SSR-enriched-cDNA 50.27 (cM) Automated name-based View Maps
RCS1535 SSR-enriched-cDNA 73.76 white clover - TrZhang2007 - E1 RCS1535 SSR-enriched-cDNA 69.4 (cM) Automated name-based View Maps
RCS3524 SSR-methyl-filtrated-genomic 80.36 No other positions
RCS3084 SSR-enriched-genomic 104.52 white clover - TrZhang2007 - B1 RCS3084 SSR-enriched-genomic 74.99 (cM) Automated name-based View Maps
TRSSRA03E05 SSR-enriched-genomic 110 No other positions
ats072 SSR-enriched-genomic 120.46 white clover - TrZhang2007 - B1 ats072 SSR-enriched-genomic 14.16 (cM) Automated name-based View Maps
RCS5845 SSR-enriched-genomic 3.12 No other positions
AW350 EST 21.04 white clover - TrZhang2007 - E1 AW350 EST 26.76 (cM) Automated name-based View Maps
AL120 EST 31.48 white clover - TrZhang2007 - E1 AL120 EST 11.18 (cM) Automated name-based View Maps
AJ01 EST 39.94 No other positions
TRSSRA02H07 SSR-enriched-genomic 47.77 No other positions
AW306 EST 55.61 No other positions
BG274 EST 70.9 No other positions
prs499 EST 76.42 No other positions
BE32 EST 93.26 No other positions
RCS3343 SSR-enriched-genomic 106.15 No other positions
TRSSRB01H04 SSR-enriched-genomic 117.86 No other positions