LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps F1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-BAC
SSR-enriched-cDNA
SSR-enriched-genomic
SSR-methyl-filtrated-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: F1
Map Start: 0 cM
Map Stop: 130.2 cM
Features by Type:
12 EST
1 SSR-BAC
1 SSR-enriched-cDNA
9 SSR-enriched-genomic
1 SSR-methyl-filtrated-genomic
24 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 24 of 24.
white clover - TrZhang2007 - F1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Mt1G05(2) SSR-BAC 2.27 No other positions
RCS4648 SSR-enriched-genomic 18.44 white clover - TrZhang2007 - A2 RCS4648 SSR-enriched-genomic 88.72 (cM) Automated name-based View Maps
RCS6244 EST 26.18 No other positions
AW218 EST 38.09 No other positions
BF213 EST 56.52 No other positions
RCS6234 EST 67.12 No other positions
RCS5565 SSR-enriched-genomic 70.03 No other positions
BF160 EST 79.46 No other positions
BG167 EST 83.03 No other positions
ats176 SSR-enriched-genomic 94.56 No other positions
RCS5705 SSR-enriched-genomic 114.57 No other positions
prs268 EST 130.2 No other positions
RCS5104 EST 0 No other positions
RCS2383 SSR-enriched-genomic 10.13 white clover - TrZhang2007 - F2 RCS2383 SSR-enriched-genomic 50.87 (cM) Automated name-based View Maps
RCS5132 EST 20.58 No other positions
RCS5885 SSR-methyl-filtrated-genomic 26.29 white clover - TrZhang2007 - E1 RCS5885 SSR-methyl-filtrated-genomic 43.37 (cM) Automated name-based View Maps
RCS4854 SSR-enriched-genomic 47.61 No other positions
RCS5462 SSR-enriched-genomic 62.9 No other positions
RCS5204 EST 67.48 No other positions
RCS3346 SSR-enriched-genomic 74.66 No other positions
RCS5485 SSR-enriched-genomic 81.97 No other positions
prs645 EST 83.67 white clover - TrZhang2007 - F2 prs645 EST 48.39 (cM) Automated name-based View Maps
RCS2802 SSR-enriched-cDNA 109.77 white clover - TrZhang2007 - F2 RCS2802 SSR-enriched-cDNA 83.39 (cM) Automated name-based View Maps
RCS5023 EST 115.71 white clover - TrZhang2007 - F2 RCS5023 EST 74.3 (cM) Automated name-based View Maps