LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps G1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-enriched-cDNA
SSR-enriched-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: G1
Map Start: 0 cM
Map Stop: 92.16 cM
Features by Type:
10 EST
4 SSR-enriched-cDNA
2 SSR-enriched-genomic
16 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 16 of 16.
white clover - TrZhang2007 - G1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BG267 EST 0 No other positions
RCS4189 EST 8.02 white clover - TrZhang2007 - F2 RCS4189 EST 22.25 (cM) Automated name-based View Maps
RCS1904 SSR-enriched-cDNA 19.49 white clover - TrZhang2007 - G2 RCS1904 SSR-enriched-cDNA 31 (cM) Automated name-based View Maps
RCS3719 EST 44.06 No other positions
TRSSRDXX16 SSR-enriched-genomic 49.61 No other positions
prs285 EST 64.46 white clover - TrZhang2007 - E1 prs285 EST 118.63 (cM) Automated name-based View Maps
BE73 EST 68.67 white clover - TrZhang2007 - C2 BE73 EST 58.63 (cM) Automated name-based View Maps
white clover - TrZhang2007 - C1 BE73 EST 54.03 (cM) Automated name-based View Maps
RCS5448 EST 83.44 white clover - TrZhang2007 - A1 RCS5448 EST 131.04 (cM) Automated name-based View Maps
prs006 EST 4.04 No other positions
RCS1647 SSR-enriched-cDNA 10.9 No other positions
RCS2962 SSR-enriched-cDNA 30.52 white clover - TrZhang2007 - B2 RCS2962 SSR-enriched-cDNA 73.53 (cM) Automated name-based View Maps
RCS3999 EST 45.18 No other positions
RCS3267 SSR-enriched-genomic 60.78 white clover - TrZhang2007 - A1 RCS3267 SSR-enriched-genomic 82.08 (cM) Automated name-based View Maps
prs305 EST 67.15 No other positions
RCS1300 SSR-enriched-cDNA 75.26 No other positions
RCS6283 EST 92.16 No other positions