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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps G2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-enriched-cDNA
SSR-enriched-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: G2
Map Start: 0 cM
Map Stop: 81.87 cM
Features by Type:
3 EST
4 SSR-enriched-cDNA
5 SSR-enriched-genomic
12 Total

Map Features

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Items 1 to 12 of 12.
white clover - TrZhang2007 - G2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TRSSRA01H11 SSR-enriched-genomic 0 No other positions
RCS1928 SSR-enriched-cDNA 6.67 No other positions
RCS1904 SSR-enriched-cDNA 31 white clover - TrZhang2007 - G1 RCS1904 SSR-enriched-cDNA 19.49 (cM) Automated name-based View Maps
RCS0040 SSR-enriched-cDNA 58.23 No other positions
BF28 EST 72.79 No other positions
TRSSRB02D12 SSR-enriched-genomic 78.63 white clover - TrZhang2007 - A2 TRSSRB02D12 SSR-enriched-genomic 26.4 (cM) Automated name-based View Maps
TRSSRA02H03 SSR-enriched-genomic 3.53 No other positions
RCS3383 SSR-enriched-cDNA 27.61 No other positions
TRSSRB01B05 SSR-enriched-genomic 43.43 No other positions
RCS6313 EST 59 No other positions
AW272 EST 77.93 white clover - TrZhang2007 - B1 AW272 EST 2.7 (cM) Automated name-based View Maps
TRSSRA02D07 SSR-enriched-genomic 81.87 No other positions