LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps H1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-enriched-cDNA
SSR-enriched-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: H1
Map Start: 0 cM
Map Stop: 84.87 cM
Features by Type:
6 EST
4 SSR-enriched-cDNA
4 SSR-enriched-genomic
14 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 14 of 14.
white clover - TrZhang2007 - H1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
RCS1616 SSR-enriched-cDNA 0 white clover - TrZhang2007 - D1 RCS1616 SSR-enriched-cDNA 93.81 (cM) Automated name-based View Maps
prs295 EST 8.37 white clover - TrZhang2007 - H2 prs295 EST 53.03 (cM) Automated name-based View Maps
RCS6021 EST 14.61 white clover - TrZhang2007 - H2 RCS6021 EST 77.87 (cM) Automated name-based View Maps
RCS4892 SSR-enriched-genomic 21.18 No other positions
RCS2247 SSR-enriched-cDNA 40.3 No other positions
AW265 EST 4.18 white clover - TrZhang2007 - H2 AW265 EST 109.74 (cM) Automated name-based View Maps
RCS2681 SSR-enriched-genomic 11.97 No other positions
RCS1597 SSR-enriched-cDNA 19.79 No other positions
RCS1080 SSR-enriched-genomic 30.36 white clover - TrZhang2007 - C1 RCS1080 SSR-enriched-genomic 58.53 (cM) Automated name-based View Maps
BE608020 EST 50.79 No other positions
prs651 EST 68.42 No other positions
TRSSRA02C02 SSR-enriched-genomic 84.87 white clover - TrZhang2007 - H2 TRSSRA02C02 SSR-enriched-genomic 106.94 (cM) Automated name-based View Maps
RCS3384 SSR-enriched-cDNA 63.86 white clover - TrZhang2007 - C2 RCS3384 SSR-enriched-cDNA 46.77 (cM) Automated name-based View Maps
RCS4342 EST 76.66 No other positions