LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps H2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-enriched-cDNA
SSR-enriched-genomic
SSR-methyl-filtrated-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: H2
Map Start: 0 cM
Map Stop: 121.63 cM
Features by Type:
5 EST
1 SSR-enriched-cDNA
6 SSR-enriched-genomic
1 SSR-methyl-filtrated-genomic
13 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 13 of 13.
white clover - TrZhang2007 - H2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
MtBA32F05R1 EST 17.34 No other positions
RCS3537 SSR-methyl-filtrated-genomic 38.06 No other positions
RCS6021 EST 77.87 white clover - TrZhang2007 - H1 RCS6021 EST 14.61 (cM) Automated name-based View Maps
TRSSRB02E01 SSR-enriched-genomic 89.14 No other positions
TRSSRA04H04 SSR-enriched-genomic 102.63 No other positions
AW265 EST 109.74 white clover - TrZhang2007 - H1 AW265 EST 4.18 (cM) Automated name-based View Maps
MTIC153 EST 0 No other positions
RCS1932 SSR-enriched-cDNA 34.92 No other positions
prs295 EST 53.03 white clover - TrZhang2007 - H1 prs295 EST 8.37 (cM) Automated name-based View Maps
ats186 SSR-enriched-genomic 83.31 No other positions
ats066 SSR-enriched-genomic 95.68 No other positions
TRSSRA02C02 SSR-enriched-genomic 106.94 white clover - TrZhang2007 - H1 TRSSRA02C02 SSR-enriched-genomic 84.87 (cM) Automated name-based View Maps
TRSSRA04B12 SSR-enriched-genomic 121.63 No other positions