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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AhCookUCDavisRGHHyb2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps FPC_Contig305
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Clone
fpc_marker
GenomicClone_Finished
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AhCookUCDavisRGHHyb2 [ View Map Set Info ]
Map Name: FPC_Contig305
Map Start: 0 cM
Map Stop: 89 cM
Features by Type:
1 Clone
1 GenomicClone_Finished
1 fpc_marker
3 Total

Map Features

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Items 1 to 3 of 3.
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig305
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AR002K07 GenomicClone_Finished 15 - 89 No other positions
AR002K13 Clone 0 - 67 No other positions
set3 fpc_marker 52 peanut - AhCookUCDavisRGHHyb2 - FPC_Contig93 set3 fpc_marker 162 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig224 set3 fpc_marker 1,062 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig52 set3 fpc_marker 365 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig199 set3 fpc_marker 131 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig420 set3 fpc_marker 58 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig447 set3 fpc_marker 386 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig135 set3 fpc_marker 100 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig107 set3 fpc_marker 96 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig59 set3 fpc_marker 474 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig473 set3 fpc_marker 70 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig65 set3 fpc_marker 600 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig0 set3 fpc_marker 6,991 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig381 set3 fpc_marker 51 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig161 set3 fpc_marker 98 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig118 set3 fpc_marker 62 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig25 set3 fpc_marker 251 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig42 set3 fpc_marker 825 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig24 set3 fpc_marker 208 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig153 set3 fpc_marker 449 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig100 set3 fpc_marker 40 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig68 set3 fpc_marker 123 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig70 set3 fpc_marker 407 (cM) Automated name-based View Maps