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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AhCookUCDavisRGHHyb2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps FPC_Contig334
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
fpc_marker
GenomicClone_ActiveFinishing
GenomicClone_Finished
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AhCookUCDavisRGHHyb2 [ View Map Set Info ]
Map Name: FPC_Contig334
Map Start: 0 cM
Map Stop: 120 cM
Features by Type:
2 GenomicClone_ActiveFinishing
1 GenomicClone_Finished
1 SSR
2 fpc_marker
6 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 6 of 6.
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig334
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AR001L01 GenomicClone_Finished 0 - 102 No other positions
AR002M19 GenomicClone_ActiveFinishing 45 - 120 No other positions
AR003C01 GenomicClone_ActiveFinishing 37 - 99 No other positions
AR003C01_ssr SSR 68 No other positions
set2a fpc_marker 82 peanut - AhCookUCDavisRGHHyb2 - FPC_Contig70 set2a fpc_marker 396 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig59 set2a fpc_marker 627 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig525 set2a fpc_marker 182 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig467 set2a fpc_marker 143 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig214 set2a fpc_marker 144 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig68 set2a fpc_marker 91 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig231 set2a fpc_marker 38 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig52 set2a fpc_marker 626 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig0 set2a fpc_marker 9,651 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig592 set2a fpc_marker 230 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig581 set2a fpc_marker 41 (cM) Automated name-based View Maps
set1 fpc_marker 51 peanut - AhCookUCDavisRGHHyb2 - FPC_Contig68 set1 fpc_marker 140 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig135 set1 fpc_marker 100 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig0 set1 fpc_marker 9,511 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig59 set1 fpc_marker 457 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig118 set1 fpc_marker 126 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig153 set1 fpc_marker 449 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig483 set1 fpc_marker 85 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig42 set1 fpc_marker 825 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig21 set1 fpc_marker 355 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig592 set1 fpc_marker 211 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig32 set1 fpc_marker 182 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig90 set1 fpc_marker 201 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig199 set1 fpc_marker 71 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig52 set1 fpc_marker 384 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig109 set1 fpc_marker 156 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig95 set1 fpc_marker 466 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig9 set1 fpc_marker 328 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig525 set1 fpc_marker 182 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig24 set1 fpc_marker 208 (cM) Automated name-based View Maps