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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AhCookUCDavisRGHHyb2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps FPC_Contig484
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Clone
fpc_marker
GenomicClone_Finished
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AhCookUCDavisRGHHyb2 [ View Map Set Info ]
Map Name: FPC_Contig484
Map Start: 0 cM
Map Stop: 129 cM
Features by Type:
1 Clone
1 GenomicClone_Finished
1 fpc_marker
3 Total

Map Features

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Items 1 to 3 of 3.
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig484
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AR001I23 GenomicClone_Finished 0 - 67 No other positions
AR003B10 Clone 50 - 129 No other positions
set8 fpc_marker 89 peanut - AhCookUCDavisRGHHyb2 - FPC_Contig384 set8 fpc_marker 45 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig34 set8 fpc_marker 207 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig29 set8 fpc_marker 77 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig178 set8 fpc_marker 47 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig99 set8 fpc_marker 28 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig59 set8 fpc_marker 474 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig0 set8 fpc_marker 7,862 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig2 set8 fpc_marker 360 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig145 set8 fpc_marker 85 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig176 set8 fpc_marker 73 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig186 set8 fpc_marker 78 (cM) Automated name-based View Maps