LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set pigeonpea-CcCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CcLG03
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: pigeonpea - CcCookUCDavis2009 [ View Map Set Info ]
Map Name: CcLG03
Map Start: 0 cM
Map Stop: 33 cM
Features by Type:
32 SNP
32 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 32.       of 2 | Next
pigeonpea - CcCookUCDavis2009 - CcLG03
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Cc_TOG894257_403 SNP 33 soybean - GmJGI8x - Gm08 TOG894257 TOG 3,840,168 - 3,841,459 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894257 TOG 38,634,736 - 38,639,597 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894257 TOG 67,949,314 - 67,952,650 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_050_TOG894257_1_451 SNP 110.39 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP7 SNP 109.98 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894257 TOG 38,656,034 - 38,659,405 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG894257_1 SNP 124.78 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897528_489 SNP 33 chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG897528 SNP 124.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG897528 TOG 37,933,011 - 37,939,247 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG897528 TOG 38,166,893 - 38,170,476 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG906822_116 SNP 33 cowpea - VuCookUCDavis2009 - VuLG03 4_100_TOG906822_1_473 SNP 110.71 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG906822 TOG 60,934,463 - 60,942,194 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG906822 SNP 99.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG906822 TOG 37,557,301 - 37,559,375 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG906822 TOG 3,987,485 - 3,991,601 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG906822_1 SNP 80.2 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG906764_398 SNP 30.5 lotus - LjKazusa200905 - LjChr4 TOG906764 TOG 67,516,796 - 67,520,600 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG906764_2 SNP 122.83 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG906764 TOG 39,213,221 - 39,218,514 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG906764 SNP 103.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG906764 TOG 39,161,100 - 39,166,140 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_131_TOG906764_2_338 SNP 109.07 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP176 SNP 109.305 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG898284_397 SNP 30.5 lotus - LjKazusa200905 - LjChr4 TOG898284 TOG 67,516,796 - 67,520,600 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG898284 SNP 4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG898284_2 SNP 122.83 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG898284 SNP 159.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG898284 TOG 39,161,100 - 39,166,140 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG898284 TOG 39,213,221 - 39,218,514 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG898284_66 SNP 30.5 lotus - LjKazusa200905 - LjChr4 TOG898284 TOG 67,516,796 - 67,520,600 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG898284 SNP 4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG898284_2 SNP 122.83 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG898284 SNP 159.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG898284 TOG 39,161,100 - 39,166,140 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG898284 TOG 39,213,221 - 39,218,514 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG906764_67 SNP 30.5 lotus - LjKazusa200905 - LjChr4 TOG906764 TOG 67,516,796 - 67,520,600 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG906764_2 SNP 122.83 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG906764 TOG 39,213,221 - 39,218,514 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG906764 SNP 103.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG906764 TOG 39,161,100 - 39,166,140 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_131_TOG906764_2_338 SNP 109.07 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP176 SNP 109.305 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG961744_1130 SNP 30.5 soybean - GmJGI8x - Gm08 TOG961744 TOG 3,651,680 - 3,653,479 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG961744 SNP 147.8 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG961744 SNP 103.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG961744 TOG 38,964,468 - 38,966,315 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG961744 TOG 67,701,219 - 67,702,655 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896164_344 SNP 29.9 soybean - GmJGI8x - Gm05 TOG896164 TOG 38,924,803 - 38,926,762 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr6 TOG896164 TOG 5,181,391 - 5,184,351 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG900129_968 SNP 27.3 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG900129 SNP 94.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG900129 TOG 2,584,115 - 2,586,654 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG900129 TOG 65,754,948 - 65,757,110 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG900129 TOG 40,520,172 - 40,553,962 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG908966_317 SNP 26.7 soybean - GmJGI8x - Gm01 TOG908966 TOG 523,885 - 527,285 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG905343_159 SNP 26.7 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG905343 SNP 94.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG905343 TOG 40,552,574 - 40,598,683 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG905343 TOG 65,715,511 - 65,717,782 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG905343 TOG 2,510,655 - 2,513,366 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG902984_604 SNP 26.1 barrel medic - Mt3.0 - MtChr4 TOG902984 TOG 41,121,286 - 41,127,848 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG902984 TOG 64,935,596 - 64,941,012 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_343_TOG902984_2_363 SNP 100.23 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG902984 TOG 40,315,217 - 40,317,080 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG928916_163 SNP 26.1 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG928916 SNP 91 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG928916 TOG 64,938,331 - 64,941,012 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG928916 TOG 40,315,217 - 40,317,080 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG902130_651 SNP 26.1 barrel medic - Mt3.0 - MtChr4 TOG902130 TOG 40,997,850 - 41,000,334 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG902130 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG902130 TOG 40,220,111 - 40,222,535 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG902130 TOG 2,253,217 - 2,257,252 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG902130 SNP 91 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896361_162 SNP 23.5 soybean - GmJGI8x - Gm08 TOG896361 TOG 1,563,754 - 1,565,722 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG896361_2 SNP 80.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG896361 TOG 40,906,154 - 40,908,237 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TOG896361 SNP 53.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP46 SNP 78.51 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896361 SNP 86.2 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896361_66 SNP 23.5 soybean - GmJGI8x - Gm08 TOG896361 TOG 1,563,754 - 1,565,722 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG896361_2 SNP 80.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG896361 TOG 40,906,154 - 40,908,237 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TOG896361 SNP 53.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP46 SNP 78.51 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896361 SNP 86.2 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG895739_724 SNP 23.5 cowpea - VuCookUCDavis2009 - VuLG03 4_014_TOG895739_2_111 SNP 98.6 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895739 SNP 87 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG895739 TOG 41,020,829 - 41,023,274 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG916436_350 SNP 23.5 soybean - GmJGI8x - Gm05 TOG916436 TOG 41,217,001 - 41,220,880 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG916436 SNP 84.6 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG916436 SNP 100.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG916436 TOG 1,254,746 - 1,257,756 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897172_139 SNP 22.9 cowpea - VuCookUCDavis2009 - VuLG03 3_116_TOG897172_1_158 SNP 97.29 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG897172 TOG 37,162,540 - 37,169,667 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG897172 TOG 62,654,820 - 62,661,878 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG897172 SNP 83.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_203_TOG897172_1_357 SNP 97.29 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG900136_642 SNP 19.1 soybean - GmJGI8x - Gm05 TOG900136 TOG 37,555,617 - 37,560,611 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG900136 TOG 36,826,783 - 36,831,158 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG900136 SNP 36.2 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG940538_401 SNP 18.5 peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP228 SNP 49.059 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG940538 TOG 73,569,992 - 73,571,803 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG940538 TOG 11,062,897 - 11,065,126 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 4_046_TOG940538_1_320 SNP 90.48 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG940538 SNP 77.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG10 Ah2n_TOG940538_1 SNP 20.51 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG901960_59 SNP 18.5 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG901960 SNP 78 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG901960 TOG 67,928,518 - 67,932,413 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_340_TOG901960_1_562 SNP 90.48 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG901960 TOG 37,097,615 - 37,101,847 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG901960 TOG 35,059,912 - 35,063,680 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896235_103 SNP 17.9 soybean - GmJGI8x - Gm08 TOG896235 TOG 10,951,547 - 10,954,912 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG896235 TOG 34,727,810 - 34,731,760 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897609_736 SNP 17.3 soybean - GmJGI8x - Gm05 TOG897609 TOG 36,769,433 - 36,776,151 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_251_TOG897609_2_1029 SNP 90.15 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG897609 TOG 45,953,480 - 45,960,788 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG897609 TOG 37,726,331 - 37,734,938 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG897609_2 SNP 82.8 (cM) Automated name-based, Automated name-based View Maps