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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A1
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
QTL_fungal
QTL_inorganic
QTL_leaf-stem
QTL_misc
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_whole-plant
QTL_yield
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: A1
Map Start: 0 cM
Map Stop: 104.58 cM
Features by Type:
1 Gene
3 QTL_fungal
1 QTL_inorganic
6 QTL_leaf-stem
1 QTL_misc
2 QTL_nematode
15 QTL_oil
10 QTL_other-seed
4 QTL_pod
7 QTL_protein
2 QTL_whole-plant
3 QTL_yield
37 RFLP
44 SNP
67 SSR
203 Total

Map Features

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Items 1 to 25 of 203.       of 9 | Next
soybean - GmComposite2003 - A1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AZ536570 SSR 31.38 soybean - GmCons30cM - A1 AZ536570 SSR 31.39 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - A1 AZ536570 SSR 30.6 (cM) Automated name-based, Automated name-based View Maps
K258_1 RFLP 31.95 soybean - GmComposite2003 - D2 K258_2 RFLP 73.51 (cM) Automated name-based View Maps
Pl ht 17-2 QTL_whole-plant 25.42 - 27.42 No other positions
Pectin 1-1 QTL_protein 86.58 - 96.58 No other positions
Sclero 3-1 QTL_fungal 70.39 - 72.39 No other positions
Sclero 6-1 QTL_fungal 70.39 - 72.39 No other positions
SCN 2-3 QTL_nematode 7.82 - 9.82 No other positions
SCN 18-1 QTL_nematode 30.93 - 53.39 No other positions
Sclero 2-1 QTL_fungal 70.39 - 72.39 No other positions
Sat_385 SSR 31.07 soybean - GmCons40cM - A1 Sat_385 SSR 31.13 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 Sat_385 SSR 31.07 (cM) Automated name-based, Automated name-based View Maps
Sat_384 SSR 31.08 soybean - GmCons40cM - A1 Sat_384 SSR 31.15 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 Sat_384 SSR 31.08 (cM) Automated name-based, Automated name-based View Maps
Satt591 SSR 31.13 soybean - GmCons40cM - A1 Satt591 SSR 31.29 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 Satt591 SSR 31.14 (cM) Automated name-based, Automated name-based View Maps
Satt454 SSR 28.08 soybean - GmCons30cM - A1 Satt454 SSR 28.08 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - A1 Satt454 SSR 27.48 (cM) Automated name-based, Automated name-based View Maps
Satt248 SSR 28.29 soybean - GmCons40cM - A1 Satt248 SSR 28.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 Satt248 SSR 28.29 (cM) Automated name-based, Automated name-based View Maps
Satt364 SSR 28.95 soybean - GmCons30cM - A1 Satt364 SSR 28.96 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - A1 Satt364 SSR 28.82 (cM) Automated name-based, Automated name-based View Maps
Sat_410 SSR 29.62 soybean - GmCons40cM - A1 Sat_410 SSR 27.86 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 Sat_410 SSR 29.62 (cM) Automated name-based, Automated name-based View Maps
A329_2 RFLP 30.28 soybean - GmComposite2003 - B2 A329_1 RFLP 62.74 (cM) Automated name-based View Maps
Satt300 SSR 30.93 No other positions
K647_2 RFLP 24.9 soybean - GmComposite2003 - D1a K647_1 RFLP 94.87 (cM) Automated name-based View Maps
Satt593 SSR 25.55 soybean - GmCons40cM - A1 Satt593 SSR 24.71 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 Satt593 SSR 25.56 (cM) Automated name-based, Automated name-based View Maps
Satt625 SSR 26.16 soybean - GmCons30cM - A1 Satt625 SSR 26.16 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - A1 Satt625 SSR 26.16 (cM) Automated name-based, Automated name-based View Maps
Satt382 SSR 26.42 soybean - GmCons30cM - A1 Satt382 SSR 26.42 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - A1 Satt382 SSR 25.96 (cM) Automated name-based, Automated name-based View Maps
Sat_371 SSR 26.87 soybean - GmCons40cM - A1 Sat_371 SSR 27.42 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 Sat_371 SSR 26.87 (cM) Automated name-based, Automated name-based View Maps
Sat_369 SSR 27.18 soybean - GmCons30cM - A1 Sat_369 SSR 27.18 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - A1 Sat_369 SSR 27.75 (cM) Automated name-based, Automated name-based View Maps
K478_2 RFLP 27.35 soybean - GmComposite2003 - D1a K478_1 RFLP 34.91 (cM) Automated name-based View Maps