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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps B2
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
Marker
QTL_fungal
QTL_inorganic
QTL_insect
QTL_leaf-stem
QTL_nematode
QTL_oil
QTL_other-seed
QTL_protein
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: B2
Map Start: 0 cM
Map Stop: 124.97 cM
Features by Type:
4 Gene
2 Marker
2 QTL_fungal
9 QTL_inorganic
1 QTL_insect
3 QTL_leaf-stem
5 QTL_nematode
7 QTL_oil
4 QTL_other-seed
4 QTL_protein
1 QTL_whole-plant
2 QTL_yield
6 RAPD
49 RFLP
43 SNP
54 SSR
196 Total

Map Features

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Items 1 to 25 of 196.       of 8 | Next
soybean - GmComposite2003 - B2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Sclero 5-2 QTL_fungal 71.81 - 73.81 No other positions
SCN 10-1 QTL_nematode 97.54 - 99.54 No other positions
SCN 10-3 QTL_nematode 117.69 - 119.69 No other positions
SCN 11-3 QTL_nematode 117.69 - 119.69 No other positions
SCN 17-2 QTL_nematode 55.2 - 62.74 No other positions
Sclero 2-4 QTL_fungal 71.81 - 73.81 No other positions
G214_4 RFLP 70.87 soybean - GmComposite2003 - D1b G214_7 RFLP 117.02 (cM) Automated name-based View Maps
soybean - GmComposite2003 - B1 G214_3 RFLP 78.91 (cM) Automated name-based View Maps
soybean - GmComposite2003 - A2 G214_2 RFLP 103.47 (cM) Automated name-based View Maps
soybean - GmComposite2003 - D2 G214_8 RFLP 18.42 (cM) Automated name-based View Maps
soybean - GmComposite2003 - A1 G214_1 RFLP 35.59 (cM) Automated name-based View Maps
soybean - GmComposite2003 - D2 G214_9 RFLP 92.66 (cM) Automated name-based View Maps
NitR7 1-1 QTL_inorganic 54.2 - 56.2 No other positions
CHLO 1-1 QTL_whole-plant 69.12 - 71.12 No other positions
NitR5 1-3 QTL_inorganic 72.21 - 74.21 No other positions
Sd wt 3-8 QTL_other-seed 54.18 - 56.18 No other positions
Sd wt 10-4 QTL_other-seed 71.51 - 73.51 No other positions
Sd wt 13-2 QTL_other-seed 64.6 - 66.6 No other positions
Sd wt 13-3 QTL_other-seed 71.8 - 73.8 No other positions
OP_D01c RAPD 70.83 soybean - GmComposite2003 - E OP_D01 RAPD 59.11 (cM) Automated name-based View Maps
Sct_094 SSR 70.55 soybean - GmCons40cM - B2 Sct_094 SSR 63.67 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - B2 Sct_094 SSR 70.56 (cM) Automated name-based, Automated name-based View Maps
Prot 4-10 QTL_protein 42.6 - 45.6 No other positions
Prot 4-11 QTL_protein 28.19 - 30.19 No other positions
Prot 1-6 QTL_protein 32.13 - 34.13 No other positions
Oil 14-1 QTL_oil 71.1 - 73.1 No other positions
Oil 16-2 QTL_oil 99.1 - 110.3 No other positions
Ole 1-5 QTL_oil 64 - 66 No other positions
Palm 1-1 QTL_oil 35.99 - 37.99 No other positions
Palm 1-2 QTL_oil 52.54 - 54.54 No other positions
Oil 2-6 QTL_oil 32.13 - 34.13 No other positions