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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps D1b
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
PCR
QTL_fungal
QTL_inorganic
QTL_insect
QTL_leaf-stem
QTL_oil
QTL_other-seed
QTL_protein
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: D1b
Map Start: -1 cM
Map Stop: 137.97 cM
Features by Type:
7 Gene
2 PCR
9 QTL_fungal
2 QTL_inorganic
2 QTL_insect
10 QTL_leaf-stem
2 QTL_oil
1 QTL_other-seed
1 QTL_protein
8 QTL_whole-plant
1 QTL_yield
1 RAPD
21 RFLP
47 SNP
65 SSR
179 Total

Map Features

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Items 1 to 25 of 179.       of 8 | Next
soybean - GmComposite2003 - D1b
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Prot 21-4 QTL_protein 36.07 - 38.07 No other positions
Pl ht 17-11 QTL_whole-plant 52.02 - 54.02 No other positions
Phytoph 2-2 QTL_fungal 75.41 - 75.94 No other positions
Phytoph 4-2 QTL_fungal 75.41 - 75.94 No other positions
Phytoph 3-2 QTL_fungal 59.61 - 75.94 No other positions
Sclero 3-5 QTL_fungal 117.62 - 119.62 No other positions
Sclero 5-4 QTL_fungal 117.62 - 119.62 No other positions
Sclero 6-3 QTL_fungal 117.62 - 119.62 No other positions
Sclero 2-6 QTL_fungal 99.89 - 101.89 No other positions
Sclero 2-7 QTL_fungal 117.62 - 119.62 No other positions
Oil 19-1 QTL_oil 115.35 - 117.35 No other positions
Oil 20-2 QTL_oil 36.07 - 38.07 No other positions
NitR6 1-2 QTL_inorganic 117.62 - 119.62 No other positions
Ldge 16-1 QTL_whole-plant 52.02 - 54.02 No other positions
NitR5 1-4 QTL_inorganic 115.35 - 117.35 No other positions
Sat_069 SSR 102.59 soybean - GmCons30cM - D1b Sat_069 SSR 102.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - D1b Sat_069 SSR 105.87 (cM) Automated name-based, Automated name-based View Maps
Pl ht 6-12 QTL_whole-plant 119.97 - 121.97 No other positions
Pl ht 9-3 QTL_whole-plant -1 - 1 No other positions
Pl ht 13-1 QTL_whole-plant 24.6 - 26.6 No other positions
Phytoph 1-2 QTL_fungal 59.61 - 75.94 No other positions
Pl ht 5-5 QTL_whole-plant 131.44 - 133.44 No other positions
Lf wdth 1-3 QTL_leaf-stem 118.3 - 120.3 No other positions
Ldge 7-1 QTL_whole-plant -1 - 1 No other positions
Hrd Sd 1-4 QTL_other-seed 118.3 - 120.3 No other positions
Satg001 SSR 137.97 No other positions