LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmCons40cM
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmCons40cM [ View Map Set Info ]
Map Name: A1
Map Start: 0 cM
Map Stop: 86.75 cM
Features by Type:
179 SNP
46 SSR
225 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 225.       of 9 | Next
soybean - GmCons40cM - A1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BARC-029787-06340 SNP 86.75 No other positions
Sat_217 SSR 85.79 soybean - GmCons30cM - A1 Sat_217 SSR 101.56 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - A1 Sat_217 SSR 101.57 (cM) Automated name-based, Automated name-based View Maps
BARC-044717-08772 SNP 85.32 No other positions
BARC-020929-03991 SNP 84.68 No other positions
BARC-027778-06658 SNP 84.61 soybean - GmComposite2003 - A1 BARC-027778-06658 SNP 86.06 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 BARC-027778-06658 SNP 86.07 (cM) Automated name-based, Automated name-based View Maps
Satt599 SSR 84.09 soybean - GmComposite2003 - A1 Satt599 SSR 85.58 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 Satt599 SSR 85.58 (cM) Automated name-based, Automated name-based View Maps
BARC-018681-02991 SNP 83.53 soybean - GmCons30cM - A1 BARC-018681-02991 SNP 97.51 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - A1 BARC-018681-02991 SNP 97.51 (cM) Automated name-based, Automated name-based View Maps
BARC-020301-04546 SNP 83.24 No other positions
BARC-050251-09529 SNP 83.22 No other positions
BARC-019309-03877 SNP 83.14 No other positions
BARC-010411-00627 SNP 83.14 No other positions
BARC-027546-06606 SNP 83.14 soybean - GmCons30cM - A1 BARC-027546-06606 SNP 89.56 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - A1 BARC-027546-06606 SNP 89.56 (cM) Automated name-based, Automated name-based View Maps
BARC-059035-15581 SNP 82.98 No other positions
Satt174 SSR 82.85 soybean - GmComposite2003 - A1 Satt174 SSR 88.58 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 Satt174 SSR 88.58 (cM) Automated name-based, Automated name-based View Maps
BARC-058849-15474 SNP 82.63 No other positions
BARC-017865-02407 SNP 82.41 soybean - GmComposite2003 - A1 BARC-017865-02407 SNP 88.78 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A1 BARC-017865-02407 SNP 88.78 (cM) Automated name-based, Automated name-based View Maps
BARC-059189-15658 SNP 82.09 No other positions
BARC-020193-04493 SNP 82.09 No other positions
BARC-065881-17470 SNP 81.99 No other positions
BARC-065871-17468 SNP 81.97 No other positions
BARC-021775-04203 SNP 81.93 No other positions
BARC-065877-17469 SNP 81.13 No other positions
BARC-015969-02023 SNP 81.13 No other positions
BARC-024333-04850 SNP 81.08 soybean - GmCons30cM - A1 BARC-024333-04850 SNP 93.08 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - A1 BARC-024333-04850 SNP 93.07 (cM) Automated name-based, Automated name-based View Maps
BARC-058879-15486 SNP 81.03 No other positions