LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps scaffold_1337
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: scaffold_1337
Map Start: 0 cM
Map Stop: 1,668 cM
Features by Type:
2 Marker
2 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 2 of 2.
soybean - GmJGI8x - scaffold_1337
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PvMcCleanNDSU2007_3_g1656 Marker 1,315 - 1,668 barrel medic - Mt3.0 - MtChr8 PvMcCleanNDSU2007_3_g1656 Marker 32,230,313 - 32,230,666 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 PvMcCleanNDSU2007_3_g1656 Marker 80,043,611 - 80,043,955 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 PvMcCleanNDSU2007_3_g1656 Marker 2,901,118 - 2,905,097 (cM) Automated name-based View Maps
VuMucheroUCRiverside2009_3_1_0301 Marker 472 - 1,668 lotus - LjKazusa200905 - LjChr0 VuMucheroUCRiverside2009_3_1_0301 Marker 27,623,617 - 27,624,690 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 VuMucheroUCRiverside2009_3_1_0301 Marker 32,230,313 - 32,231,488 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 VuMucheroUCRiverside2009_3_1_0301 Marker 2,900,274 - 2,905,310 (cM) Automated name-based View Maps