LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set alfalfa-MsJulier2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: alfalfa - MsJulier2003 [ View Map Set Info ]
Map Name: 2
Map Start: 0 cM
Map Stop: 101.58 cM
Features by Type:
22 SSR
22 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 22 of 22.
alfalfa - MsJulier2003 - 2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
MTIC21A SSR 0 No other positions
MTIC19-1 SSR 3.18 No other positions
MTIC452G SSR 9.95 No other positions
B21E13-2 SSR 16.68 No other positions
MTIC19-2 SSR 20.21 No other positions
MTIC210 SSR 21.69 No other positions
MTIC19-3 SSR 23.07 No other positions
MTIC354 SSR 23.72 No other positions
MTIC21B SSR 25.29 No other positions
MTIC21F SSR 26.63 No other positions
MTIC304 SSR 26.84 No other positions
B21E13-3 SSR 28.64 No other positions
MTIC21E SSR 31.08 No other positions
MTIC452D SSR 32.7 No other positions
MTIC12-2 SSR 37.44 No other positions
MTIC452E SSR 38.18 No other positions
MTIC365 SSR 42.7 alfalfa - MsSledge2005 - 2 MTIC365 SSR 77.87 (cM) Automated name-based, Automated name-based View Maps
MTIC145 SSR 50.03 barrel medic - MtYoungUMinn2006 - 2 MTIC145 SSR 24.7 (cM) Automated name-based, Automated name-based View Maps
MTIC12-1 SSR 54.34 No other positions
MTIC27 SSR 63.87 No other positions
MTIC451 SSR 77.29 No other positions
MTIC278D SSR 101.58 No other positions