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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvConsensus_GaleanoFernandez2011_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Pv03
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL_organic
QTL_root
QTL_seed
QTL_whole-plant
QTL_yield
RAPD
SNP
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvConsensus_GaleanoFernandez2011_a [ View Map Set Info ]
Map Name: Pv03
Map Start: 0 cM
Map Stop: 235.77 cM
Features by Type:
3 QTL_organic
8 QTL_root
6 QTL_seed
2 QTL_whole-plant
9 QTL_yield
7 RAPD
48 SNP
39 SSR
7 STS
129 Total

Map Features

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Items 1 to 25 of 129.       of 6 | Next
common bean - PvConsensus_GaleanoFernandez2011_a - Pv03
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
g762 SNP 0 No other positions
Leg187 SNP 5.42 No other positions
g1296 SNP 6.8 No other positions
Seed yield 2-2 QTL_yield 8 - 45.5 No other positions
Leg310 SNP 9.25 No other positions
BMb1171 SSR 14.34 No other positions
Leg463 SNP 19.85 No other positions
Bng32 STS 22.94 No other positions
Root density 1-1 QTL_root 27.8 - 37.6 No other positions
BMb590 SSR 28.7 No other positions
Leg213 SNP 32.21 No other positions
g1624 SNP 33.05 No other positions
g2558 SNP 34.3 No other positions
g2218 SNP 34.3 No other positions
BSNP56 SNP 34.3 No other positions
g664 SNP 37.23 No other positions
BSNP59 SNP 39.84 No other positions
BMd36 SSR 41.86 No other positions
Leg169 SNP 43.83 No other positions
g2213 SNP 47.4 No other positions
BMb793 SSR 47.56 No other positions
g665 SNP 50.25 No other positions
Seed water absorption 1-1 QTL_seed 50.7 - 68.3 No other positions
Seed yield 1-1 QTL_yield 51.4 - 83 No other positions
g2341 SNP 54.14 No other positions