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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set common bean-PvConsensus_GaleanoFernandez2011_a
(Reference Set)
Min.
Correspondences
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Maps Pv04
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
QTL_development
QTL_inorganic
QTL_root
QTL_seed
QTL_whole-plant
QTL_yield
RAPD
SNP
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvConsensus_GaleanoFernandez2011_a [ View Map Set Info ]
Map Name: Pv04
Map Start: 0 cM
Map Stop: 199.87 cM
Features by Type:
4 AFLP
3 QTL_development
2 QTL_inorganic
5 QTL_root
2 QTL_seed
11 QTL_whole-plant
9 QTL_yield
19 RAPD
27 SNP
43 SSR
4 STS
129 Total

Map Features

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Items 1 to 25 of 129.       of 6 | Next
common bean - PvConsensus_GaleanoFernandez2011_a - Pv04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BMb717 SSR 0 No other positions
Seed water absorption 1-3 QTL_seed 20.1 - 31.3 No other positions
AI1402 RAPD 21.85 No other positions
AI1401 RAPD 23.57 No other positions
SSR-IAC52 SSR 28.34 No other positions
g968 SNP 28.53 No other positions
PV-ag004 SSR 35.03 No other positions
g118 SNP 36.1 No other positions
BMd9 SSR 37.08 No other positions
Leg423 SNP 41.39 No other positions
BMd15 SSR 42.78 No other positions
Bng224 STS 46.29 No other positions
Internode length 1-6 QTL_whole-plant 47.2 - 68.6 No other positions
g755 SNP 47.94 No other positions
BMa12 SSR 50.18 No other positions
Seed yield 2-4 QTL_yield 52.4 - 78.3 No other positions
BMa112 SSR 53.93 No other positions
Leg214 SNP 55.57 No other positions
O701 RAPD 56.06 No other positions
Plant height 2-6 QTL_whole-plant 56.2 - 86.6 No other positions
Plant height 2-2 QTL_whole-plant 59.2 - 90 No other positions
Leg442 SNP 59.9 No other positions
BMa288 SSR 61.85 No other positions
g1564 SNP 67.12 No other positions
Y502 RAPD 67.68 No other positions