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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set common bean-PvConsensus_GaleanoFernandez2011_a
(Reference Set)
Min.
Correspondences
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Maps Pv06
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
QTL_development
QTL_organic
QTL_root
QTL_seed
QTL_whole-plant
QTL_yield
RAPD
SNP
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvConsensus_GaleanoFernandez2011_a [ View Map Set Info ]
Map Name: Pv06
Map Start: 0 cM
Map Stop: 162.48 cM
Features by Type:
1 AFLP
11 QTL_development
1 QTL_organic
4 QTL_root
21 QTL_seed
4 QTL_whole-plant
3 QTL_yield
7 RAPD
45 SNP
28 SSR
7 STS
132 Total

Map Features

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Items 1 to 25 of 132.       of 6 | Next
common bean - PvConsensus_GaleanoFernandez2011_a - Pv06
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AG1301 RAPD 0 No other positions
Seed weight 1-25 QTL_seed 0 - 10.7 No other positions
Plant height 1-3 QTL_whole-plant 6.7 - 42.3 peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a - B04 Plant height 1-3 QTL_whole-plant 61.6 - 77.2 (cM) Automated name-based, Automated name-based View Maps
g2538 SNP 7.52 No other positions
Bng84 STS 10.56 No other positions
Seed weight 4-1 QTL_seed 11.4 - 30.8 No other positions
Seed yield 1-4 QTL_yield 12.4 - 33 No other positions
g2551 SNP 12.99 No other positions
Root length 1-1 QTL_root 13.2 - 37.1 No other positions
Seed weight 1-7 QTL_seed 14 - 25.6 No other positions
Last flower 1-12 QTL_development 15.4 - 38.1 No other positions
Seed yield/Full maturity, bean 1-4 QTL_yield 16.5 - 35.5 No other positions
g139 SNP 18.16 No other positions
Seed length 1-9 QTL_seed 18.2 - 42 No other positions
U1301 RAPD 21.33 No other positions
g1192 SNP 21.62 No other positions
Seeds per plant 1-1 QTL_yield 22.6 - 57.9 peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a - A05 Seeds per plant 1-1 QTL_yield 0 - 30 (cM) Automated name-based, Automated name-based View Maps
M1601 RAPD 26.19 No other positions
Seed weight 1-8 QTL_seed 26.4 - 32.2 No other positions
Full maturity, bean 3-13 QTL_development 28 - 37.7 No other positions
gTC1436 SNP 28.08 No other positions
CAC1 SSR 28.43 No other positions
BMb1061 SSR 28.43 No other positions
BM278 SSR 29.42 No other positions
g1639 SNP 29.55 No other positions