LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvConsensus_GaleanoFernandez2011_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Pv10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
QTL_inorganic
QTL_organic
QTL_root
QTL_seed
QTL_whole-plant
QTL_yield
RAPD
SNP
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvConsensus_GaleanoFernandez2011_a [ View Map Set Info ]
Map Name: Pv10
Map Start: 0 cM
Map Stop: 131.88 cM
Features by Type:
3 AFLP
2 QTL_inorganic
2 QTL_organic
10 QTL_root
2 QTL_seed
1 QTL_whole-plant
2 QTL_yield
16 RAPD
18 SNP
30 SSR
3 STS
89 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 89.       of 4 | Next
common bean - PvConsensus_GaleanoFernandez2011_a - Pv10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BM212 SSR 0 common bean - PvMcCleanNDSU2007 - 10 BM212 SSR 97 (cM) Automated name-based, Automated name-based View Maps
Root length, specific 2-7 QTL_root 1.8 - 5.4 No other positions
g1661 SNP 4.77 No other positions
Root proton exudation 1-2 QTL_root 5.5 - 17.2 No other positions
g2260 SNP 6.26 No other positions
g1341 SNP 8.21 No other positions
BMd42 SSR 9.81 common bean - PvMcCleanNDSU2007 - 10 Bmd42 SSR 66 (cM) Automated name-based, Automated name-based View Maps
g1724 SNP 10.8 No other positions
g2418 SNP 14.31 No other positions
Plant P 1-2 QTL_inorganic 17.2 - 20.7 No other positions
g2268 SNP 17.38 No other positions
g2560 SNP 18.49 No other positions
Root length, specific 2-2 QTL_root 18.5 - 22.3 No other positions
Plant P 2-2 QTL_inorganic 18.7 - 22.3 No other positions
AGAC01 AFLP 19.09 No other positions
PVBR185 SSR 22.36 No other positions
g2600 SNP 26.09 No other positions
BSn19 SNP 26.75 No other positions
Bng68 STS 33.07 No other positions
g1994 SNP 33.07 No other positions
Seed weight 3-13 QTL_seed 34.1 - 70.1 No other positions
g2331 SNP 34.82 No other positions
Leg1640 SNP 40.3 No other positions
Leg444 SNP 41.57 No other positions
BMe17 SSR 41.85 No other positions