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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvMcCleanNDSU2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
allele-indel
CAPS
dCAPS
RAPD
RFLP
size-indel
SNAP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvMcCleanNDSU2007 [ View Map Set Info ]
Map Name: 1
Map Start: 0 cM
Map Stop: 172 cM
Features by Type:
1 AFLP
23 CAPS
3 RAPD
7 RFLP
1 SNAP
4 SSR
1 allele-indel
9 dCAPS
4 size-indel
53 Total

Map Features

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Items 1 to 25 of 53.       of 3 | Next
common bean - PvMcCleanNDSU2007 - 1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
g1329 dCAPS 0 - 22 No other positions
g909 SSR 0 No other positions
g523 CAPS 22 No other positions
g683 CAPS 29 No other positions
g2562 CAPS 33 No other positions
g1367 CAPS 36 No other positions
Bng173 RFLP 36 - 39 No other positions
TGA1.1 size-indel 39 No other positions
CV542014 size-indel 41 No other positions
g499 CAPS 43 No other positions
g1224 CAPS 44 No other positions
Bng122 RFLP 47 common bean - BAT93_x_JALOEEP558_b - B01 Bng122 RFLP 12.77 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - G Bng122_1 RFLP 8.56 (cM) Automated name-based, Automated name-based View Maps
A04pO519 AFLP 54 No other positions
g2132 CAPS 0 - 22 No other positions
g510 CAPS 22 - 29 No other positions
Bng171 RFLP 54 - 72 common bean - BAT93_x_JALOEEP558_b - B01 Bng171a RFLP 0 (cM) Automated name-based, Automated name-based View Maps
g1404 CAPS 72 No other positions
g786 CAPS 80 No other positions
g1886 CAPS 80 - 89 No other positions
g2504 CAPS 80 - 89 No other positions
g1952 CAPS 89 No other positions
g2162 dCAPS 89 - 100 No other positions
g1954 dCAPS 100 No other positions
g1176 dCAPS 103 No other positions
g724 CAPS 105 No other positions