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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvMcCleanNDSU2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
allele-indel
Allozyme
CAPS
dCAPS
RAPD
RFLP
size-indel
SNAP
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvMcCleanNDSU2007 [ View Map Set Info ]
Map Name: 3
Map Start: 0 cM
Map Stop: 179 cM
Features by Type:
1 Allozyme
19 CAPS
6 RAPD
8 RFLP
1 SNAP
1 SSR
1 STS
1 allele-indel
6 dCAPS
2 size-indel
46 Total

Map Features

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Items 1 to 25 of 46.       of 2 | Next
common bean - PvMcCleanNDSU2007 - 3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
g586 dCAPS 98 - 104 No other positions
g1520 dCAPS 98 No other positions
DROF10a RAPD 95 No other positions
D1377 RFLP 112 common bean - BAT93_x_JALOEEP558_b - B03 D1377 RFLP 104.27 (cM) Automated name-based, Automated name-based View Maps
g1830 CAPS 130 No other positions
D1151 RFLP 146 - 152 common bean - BAT93_x_JALOEEP558_b - B03 D1151 RFLP 132 (cM) Automated name-based, Automated name-based View Maps
DROI16a RAPD 178 No other positions
Bng12 RFLP 119 - 130 No other positions
g2274 CAPS 146 No other positions
DROG19a RAPD 178 - 179 No other positions
g964 CAPS 104 No other positions
g1805 dCAPS 119 No other positions
g2493 CAPS 119 - 130 No other positions
g2108 CAPS 138 No other positions
g2068 size-indel 152 No other positions
Skdh Allozyme 178 - 179 No other positions
DRON9a RAPD 178 - 179 No other positions
g762 allele-indel 0 No other positions
g1296 CAPS 0 - 14 No other positions
D1066b RFLP 0 - 14 No other positions
D1132 RFLP 14 common bean - BAT93_x_JALOEEP558_b - B03 D1132 RFLP 14.04 (cM) Automated name-based, Automated name-based View Maps
g1624 dCAPS 19 No other positions
g2218 CAPS 21 No other positions
g2558 CAPS 21 No other positions
g664 CAPS 21 - 30 No other positions