LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvMcCleanNDSU2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
allele-indel
Allozyme
CAPS
dCAPS
RAPD
RFLP
size-indel
SNAP
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvMcCleanNDSU2007 [ View Map Set Info ]
Map Name: 4
Map Start: -1 cM
Map Stop: 118 cM
Features by Type:
2 Allozyme
4 CAPS
2 RAPD
5 RFLP
1 SNAP
5 SSR
3 STS
1 allele-indel
2 dCAPS
2 size-indel
27 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 27.       of 2 | Next
common bean - PvMcCleanNDSU2007 - 4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Me Allozyme 0 - 22 No other positions
g118 SSR 0 No other positions
g968 dCAPS -1 - 0 No other positions
Bng224 RFLP 0 - 22 soybean - GmComposite2003 - K Bng224_1 RFLP 75.23 (cM) Automated name-based, Automated name-based View Maps
common bean - BAT93_x_JALOEEP558_b - B04 Bng224 RFLP 14.07 (cM) Automated name-based, Automated name-based View Maps
g755 size-indel 22 No other positions
g1564 CAPS 41 No other positions
g2595 CAPS 53 No other positions
D1325 RFLP 58 common bean - BAT93_x_JALOEEP558_b - B04 D1325 RFLP 19.35 (cM) Automated name-based, Automated name-based View Maps
BM149 SSR 65 common bean - PvConsensus_GaleanoFernandez2011_a - Pv04 BM149 SSR 99.16 (cM) Automated name-based, Automated name-based View Maps
g128 allele-indel 65 - 74 No other positions
BM199 SSR 74 common bean - PvConsensus_GaleanoFernandez2011_a - Pv04 BM199 SSR 158.25 (cM) Automated name-based, Automated name-based View Maps
BM68 SSR 74 common bean - PvConsensus_GaleanoFernandez2011_a - Pv04 BM68 SSR 158.25 (cM) Automated name-based, Automated name-based View Maps
G-AP3S STS 74 No other positions
G-AP7S STS 74 No other positions
G-U14S STS 74 No other positions
g2685 size-indel 78 No other positions
Rbcs Allozyme 78 - 90 No other positions
g483 dCAPS 78 - 90 No other positions
D1298 RFLP 78 - 90 common bean - BAT93_x_JALOEEP558_b - B04 D1298 RFLP 60.17 (cM) Automated name-based, Automated name-based View Maps
Bng71 RFLP 90 No other positions
g2303 SNAP 98 No other positions
g1375 CAPS 103 No other positions
DROF10b RAPD 110 No other positions
g2467 CAPS 117 No other positions
DROF1c RAPD 117 - 118 No other positions