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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvMcCleanNDSU2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
CAPS
dCAPS
Protein
RAPD
RFLP
size-indel
SNAP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvMcCleanNDSU2007 [ View Map Set Info ]
Map Name: 7
Map Start: 0 cM
Map Stop: 156 cM
Features by Type:
1 AFLP
12 CAPS
1 Protein
3 RAPD
9 RFLP
1 SNAP
5 SSR
8 dCAPS
2 size-indel
42 Total

Map Features

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Items 1 to 25 of 42.       of 2 | Next
common bean - PvMcCleanNDSU2007 - 7
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
g503 CAPS 0 No other positions
g134 CAPS 0 - 10 No other positions
ChI RFLP 0 - 10 common bean - BAT93_x_JALOEEP558_b - B07 ChI RFLP 7.03 (cM) Automated name-based, Automated name-based View Maps
Bng191 RFLP 0 - 10 common bean - BAT93_x_JALOEEP558_b - B07 Bng191 RFLP 0 (cM) Automated name-based, Automated name-based View Maps
CHI-INT3 size-indel 10 No other positions
g2298 SSR 20 No other positions
g1719 CAPS 20 - 25 No other positions
DROF1b RAPD 25 No other positions
Bng199 RFLP 28 common bean - BAT93_x_JALOEEP558_b - B07 Bng199 RFLP 18.28 (cM) Automated name-based, Automated name-based View Maps
g1615 CAPS 31 No other positions
g501 dCAPS 34 No other positions
g2129 SNAP 38 No other positions
Bng060 RFLP 38 - 44 common bean - BAT93_x_JALOEEP558_b - B07 Bng060 RFLP 33.4 (cM) Automated name-based, Automated name-based View Maps
Phs Protein 44 No other positions
D1861 RFLP 44 - 57 common bean - BAT93_x_JALOEEP558_b - B07 D1861 RFLP 34.81 (cM) Automated name-based, Automated name-based View Maps
g1233 dCAPS 57 No other positions
g2531 CAPS 57 - 63 No other positions
P1090 RFLP 57 - 63 common bean - BAT93_x_JALOEEP558_b - B07 P1090 RFLP 39.38 (cM) Automated name-based, Automated name-based View Maps
g366 dCAPS 63 No other positions
g1378 CAPS 65 No other positions
g487 CAPS 66 No other positions
Bng204 RFLP 70 common bean - BAT93_x_JALOEEP558_b - B07 Bng204 RFLP 53.45 (cM) Automated name-based, Automated name-based View Maps
D0190 RFLP 73 common bean - BAT93_x_JALOEEP558_b - B07 D0190 RFLP 62.24 (cM) Automated name-based, Automated name-based View Maps
g415 SSR 73 No other positions
BM046 SSR 73 common bean - PvConsensus_GaleanoFernandez2011_a - Pv07 BM046 SSR 98.14 (cM) Automated name-based, Automated name-based View Maps