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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvMcCleanNDSU2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 9
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
allele-indel
CAPS
dCAPS
RAPD
RFLP
SCAR
size-indel
SNAP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvMcCleanNDSU2007 [ View Map Set Info ]
Map Name: 9
Map Start: 0 cM
Map Stop: 121 cM
Features by Type:
15 CAPS
1 RAPD
5 RFLP
1 SCAR
2 SNAP
2 SSR
2 allele-indel
8 dCAPS
1 size-indel
37 Total

Map Features

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Items 1 to 25 of 37.       of 2 | Next
common bean - PvMcCleanNDSU2007 - 9
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Gluc SCAR 0 No other positions
g2398 CAPS 5 No other positions
g860 CAPS 5 No other positions
g385 dCAPS 5 No other positions
g195 CAPS 5 - 16 No other positions
g2209 CAPS 5 - 16 No other positions
g2335 CAPS 5 - 16 No other positions
FVE allele-indel 16 No other positions
g1379 CAPS 16 - 28 No other positions
g634 CAPS 28 No other positions
g1671 allele-indel 28 - 52 No other positions
g2510 CAPS 52 No other positions
g1126 CAPS 58 No other positions
BM202 SSR 58 common bean - PvConsensus_GaleanoFernandez2011_a - Pv09 BM202 SSR 27.23 (cM) Automated name-based, Automated name-based View Maps
g1206 CAPS 60 No other positions
g2516 CAPS 63 No other positions
g2613 CAPS 63 - 64 No other positions
g708 dCAPS 64 No other positions
Bng228 RFLP 67 common bean - BAT93_x_JALOEEP558_b - B09 Bng228 RFLP 62.51 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - C2 Bng228_1 RFLP 74.18 (cM) Automated name-based, Automated name-based View Maps
Bng102 RFLP 68 common bean - BAT93_x_JALOEEP558_b - B09 Bng102 RFLP 65.67 (cM) Automated name-based, Automated name-based View Maps
g792 CAPS 70 No other positions
g2272 dCAPS 70 - 77 No other positions
g732 dCAPS 77 No other positions
g1107 CAPS 82 No other positions
g993 size-indel 84 No other positions