LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_GautamiFonceka2012_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A05
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_GautamiFonceka2012_a [ View Map Set Info ]
Map Name: A05
Map Start: 0 cM
Map Stop: 232.63 cM
Features by Type:
61 SSR
61 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 61.       of 3 | Next
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ARS715 SSR 0 No other positions
ARS720 SSR 37.5 No other positions
GM1049 SSR 50.75 peanut - TT_Tifrunner_x_GT-C20_b - LG19 GM1049 SSR 59.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GM1049 SSR 83.842 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM1049 SSR 52.946 (cM) Automated name-based, Automated name-based View Maps
GM1878.A05 SSR 54.65 peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 GM1878.A09 SSR 0 (cM) Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG12 GM1878 SSR 85.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIII GM1878 SSR 204.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV GM1878 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV GM1878 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIII GM1878 SSR 192.59 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM1878 SSR 71.274 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV GM1878 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG19 GM1878 SSR 19.5 (cM) Automated name-based, Automated name-based View Maps
GM654 SSR 61.2 No other positions
GA34 SSR 64.14 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GM632 SSR 43.029 (cM) Automated name-based, Automated name-based View Maps
IPAHM356 SSR 71.55 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV IPAHM356 SSR 176 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV IPAHM356 SSR 8.239 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV IPAHM356 SSR 27 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 IPAHM356 SSR 59.229 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG05 IPAHM356 SSR 90.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV IPAHM356 SSR 6.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG05 IPAHM356 SSR 0 (cM) Automated name-based, Automated name-based View Maps
GM1577 SSR 82.1 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV GM1577 SSR 184.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV GM1577 SSR 10.592 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GM1577 SSR 53.751 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM1577 SSR 53.778 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG19 GM1577 SSR 23.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG05 GM1577 SSR 8.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV GM1577 SSR 43.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV GM1577 SSR 11.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG05 GM1577 SSR 44.4 (cM) Automated name-based, Automated name-based View Maps
seq9A7_2 SSR 85.95 No other positions
TC3A12 SSR 91.73 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV TC3A12 SSR 134.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG05 TC3A12 SSR 106.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG05 TC3A12 SSR 5.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG08 Ah1TC3A12 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV TC3A12 SSR 17.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 TC3A12 SSR 65.195 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhV TC3A12 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV TC3A12 SSR 16.046 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A05 TC3A12 SSR 110 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV TC3A12 SSR 55.7 (cM) Automated name-based, Automated name-based View Maps
TC2B09.A05 SSR 93.73 peanut - TT_VG9514_x_TAG24_a - A05 TC2B09 SSR 43.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV TC2B09 SSR 20.83 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG08 Ah1TC2B09 SSR 4.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 TC2B09 SSR 62.382 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIV TC2B09 SSR 103.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 TC2B09.B05 SSR 83.72 (cM) Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG04 TC2B09 SSR 70.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A05 TC3A12 SSR 110 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV TC2B09 SSR 19.4 (cM) Automated name-based, Automated name-based View Maps
ARS806 SSR 101.78 peanut - TT_VG9514_x_TAG24_a - A05 ARS806 SSR 50.1 (cM) Automated name-based, Automated name-based View Maps
GM1955 SSR 104.62 peanut - TT_TG26_x_GPBD4_a - AhV GM1955 SSR 38.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV GM1955 SSR 18.298 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV GM1955 SSR 63.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM1955 SSR 54.89 (cM) Automated name-based, Automated name-based View Maps
RN6F05 SSR 105.84 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV RN6F05 SSR 141.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhV RN6F05 SSR 7.1 (cM) Automated name-based, Automated name-based View Maps
Ah6_125 SSR 114.89 No other positions
ARS702 SSR 117.25 No other positions
GM1007 SSR 120.81 peanut - TT_TG26_x_GPBD4_a - AhV GM1007 SSR 62.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV GM1007 SSR 68.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV GM1007 SSR 20.478 (cM) Automated name-based, Automated name-based View Maps
GA35.A05 SSR 123.81 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GM633 SSR 60.403 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV GA35 SSR 143.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 GA35.A01 SSR 41.14 (cM) Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GA35 SSR 61.533 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhV GA35 SSR 8.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - A05 GM633 SSR 52.3 (cM) Automated name-based, Automated name-based View Maps
GM633.A05 SSR 123.81 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GM633 SSR 60.403 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 GM633.A10 SSR 78.62 (cM) Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GA35 SSR 61.533 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV GM633 SSR 143.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhV GM633 SSR 8.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV GM633 SSR 71.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV GM633 SSR 25.228 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - A05 GM633 SSR 52.3 (cM) Automated name-based, Automated name-based View Maps
seq8C10 SSR 131.92 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 Seq8C10 SSR 62.56 (cM) Automated name-based, Automated name-based View Maps
seq9A7 SSR 138.75 No other positions
TC3G05 SSR 144.35 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 TC3G05 SSR 53.133 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV TC3G05 SSR 187.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG05 TC3G05 SSR 11.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TC3G05 SSR 75.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 TC3G05 SSR 27.129 (cM) Automated name-based, Automated name-based View Maps
Ah3TC22H12 SSR 144.95 No other positions
Ah3TC28A12 SSR 144.95 No other positions
PM179 SSR 144.95 peanut - TT_VG9514_x_TAG24_a - A02 PM179 SSR 106.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV PM179 SSR 143.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhV PM179 SSR 9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 PM179 SSR 57.666 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV PM179 SSR 23.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG19 PM179 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV PM179 SSR 75.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV PM179 SSR 65.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 PM179 SSR 95.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 PM179 SSR 56.307 (cM) Automated name-based, Automated name-based View Maps