LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_GautamiFonceka2012_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_GautamiFonceka2012_a [ View Map Set Info ]
Map Name: A06
Map Start: 0 cM
Map Stop: 275.79 cM
Features by Type:
57 SSR
57 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 57.       of 3 | Next
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
IPAHM171c SSR 0 peanut - TT_AhComposite_SujayGowda2012_a - AhVI IPAHM171c SSR 5.521 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhVI IPAHM171c SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG04 IPAHM171c SSR 56.8 (cM) Automated name-based, Automated name-based View Maps
IPAHM171.A06 SSR 3.9 peanut - TT_TAG24_x_ICGV86031_a - LG_AhVI IPAHM171 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - B08 IPAHM171 SSR 151.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA06 IPAHM171 SSR 44.104 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI IPAHM171 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B08 IPAHM171.B08 SSR 110.19 (cM) Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B01 IPAHM171.B01 SSR 31.41 (cM) Automated name-based View Maps
PM377 SSR 6.79 peanut - TT_VG9514_x_TAG24_a - A06 PM377 SSR 90.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhVI PM377 SSR 25.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 PM377 SSR 32.947 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG10 PM377 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhVI PM377 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI PM377 SSR 25.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhVI PM377 SSR 0 (cM) Automated name-based, Automated name-based View Maps
seq9H8a SSR 9.35 No other positions
S108 SSR 16.65 peanut - TT_TG26_x_GPBD4_a - AhVI S108 SSR 14.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhVI S108 SSR 10.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI S108 SSR 15.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhVI S108 SSR 15.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhVI S108 SSR 12.401 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 S108 SSR 47.77 (cM) Automated name-based, Automated name-based View Maps
GM1097 SSR 38.6 peanut - TT_AhComposite_SujayGowda2012_a - AhVI GM1097 SSR 23.779 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhVI GM1097 SSR 46.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhVI GM1097 SSR 22.1 (cM) Automated name-based, Automated name-based View Maps
AC2H11 SSR 43.09 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 AC2H11 SSR 33.348 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA06 AC2H11 SSR 6.429 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A06 AC2H11 SSR 140.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG10 Ah2AC2H11 SSR 46.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A06 AC2H11 SSR 52.8 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB06 AC2H11 SSR 12.566 (cM) Automated name-based, Automated name-based View Maps
TC3H07a SSR 45.84 peanut - TT_TG26_x_GPBD4_a - AhVI TC3H07a SSR 60.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhVI TC3H07a SSR 40.774 (cM) Automated name-based, Automated name-based View Maps
IPAHM659 SSR 48.74 peanut - TT_VG9514_x_TAG24_a - A06 IPAHM659 SSR 14.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIX IPAHM659 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 IPAHM659 SSR 42.607 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII IPAHM659 SSR 130.51 (cM) Automated name-based, Automated name-based View Maps
RN31A05 SSR 49.34 peanut - BB_A.ipaensis_x_A.magna_a - BB06 RN31A05 SSR 11.304 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B06 RN31A05 SSR 37.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 RN31A05 SSR 44.2 (cM) Automated name-based, Automated name-based View Maps
seq4H06 SSR 49.34 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 Seq4H06 SSR 42.672 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB06 Seq4H06 SSR 11.436 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA06 Seq4H06 SSR 12.658 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A06 Seq4H06 SSR 124.4 (cM) Automated name-based, Automated name-based View Maps
RN21H01 SSR 49.94 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 RN21H01 SSR 45.123 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A06 RN21H01 SSR 119.4 (cM) Automated name-based, Automated name-based View Maps
seq15D3.A06 SSR 49.94 peanut - AA_A.duranensis_x_A.stenosperma_d - A06 Seq15D3 SSR 39.1 (cM) Automated name-based, Automated name-based View Maps
TC3H07c SSR 66.44 No other positions
TC3H07b SSR 71.04 No other positions
seq18G9_A1 SSR 77.92 No other positions
Ah3TC28E09 SSR 80.02 No other positions
PM5 SSR 80.22 No other positions
GM1489 SSR 83.7 No other positions
GM1490 SSR 84.4 peanut - TT_Tifrunner_x_GT-C20_b - LG10 GM1490 SSR 84.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 GM1490 SSR 99.265 (cM) Automated name-based, Automated name-based View Maps
Ah20 SSR 86.03 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 Ah20 SSR 55.385 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A05 Ah20 SSR 100.3 (cM) Automated name-based, Automated name-based View Maps
seq18A8_A1 SSR 87.83 No other positions
TC9C06 SSR 88.83 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 TC9C06 SSR 60.007 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG10 Ah2TC9C06 SSR 21.4 (cM) Automated name-based, Automated name-based View Maps
TC1A01 SSR 89.61 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 TC1A01 SSR 45.605 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhVI TC1A01 SSR 8.513 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI TC1A01 SSR 15.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhVI TC1A01 SSR 15.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhVI TC1A01 SSR 7.6 (cM) Automated name-based, Automated name-based View Maps
Ah3TC38A07 SSR 94.66 No other positions