LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_GautamiFonceka2012_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps B03
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_GautamiFonceka2012_a [ View Map Set Info ]
Map Name: B03
Map Start: 0 cM
Map Stop: 282.02 cM
Features by Type:
60 SSR
60 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 60.       of 3 | Next
peanut - TT_AhConsensus_GautamiFonceka2012_a - B03
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM1854 SSR 0 peanut - AA_A.duranensis_x_A.duranensis_a - A03 GM1854 SSR 139.925 (cM) Automated name-based, Automated name-based View Maps
Ah3TC23E04.B03 SSR 6.55 peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 Ah3TC23E04.A07 SSR 99.47 (cM) Automated name-based View Maps
Ah3TC29H08 SSR 8.15 No other positions
TC2A02 SSR 8.55 peanut - AA_A.duranensis_x_A.stenosperma_a - A03 TC2A02 SSR 243.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG18 Ah1TC2A02 SSR 15.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 TC2A02 SSR 23.169 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 TC2A02 SSR 18.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIV TC2A02 SSR 110 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIV TC2A02 SSR 110 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB03 TC2A02 SSR 10.869 (cM) Automated name-based, Automated name-based View Maps
TC3E02.B03 SSR 10.15 peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TC3E02 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXIII TC3E02 SSR 73.855 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG13 TC3E02 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 TC3E02.A09 SSR 251.62 (cM) Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 TC3E02.A03 SSR 76.29 (cM) Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A03 TC3E02 SSR 269.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIII TC3E02 SSR 232.4 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 TC3E02 SSR 30.083 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXIII TC3E02 SSR 156.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIII TC3E02 SSR 220.39 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG04 Ah1TC3E02 SSR 56.8 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B03 TC3E02 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXIII TC3E02 SSR 117.8 (cM) Automated name-based, Automated name-based View Maps
TC2A02b SSR 23.75 No other positions
TC2A02a SSR 28.1 No other positions
seq14C11 SSR 33.75 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB03 Seq14C11 SSR 96.483 (cM) Automated name-based, Automated name-based View Maps
TC4E10.B03 SSR 58.85 peanut - AA_A.duranensis_x_A.stenosperma_b - AA03 TC4E10 SSR 26.144 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXV TC4E10 SSR 67.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 TC4E10.A01 SSR 171.01 (cM) Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TC4E10 SSR 53.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A03 TC4E10 SSR 82.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXV TC4E10 SSR 67.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB03 TC4E10 SSR 73.805 (cM) Automated name-based, Automated name-based View Maps
seq15D03.B03 SSR 70.53 peanut - AA_A.duranensis_x_A.stenosperma_b - AA06 Seq15D03 SSR 15.232 (cM) Automated name-based, Automated name-based View Maps
seq19D09.B03 SSR 72.19 peanut - TT_ICGS76_x_CSMG84-1_a - LG09 pPGSSeq19D09 SSR 96.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIII pPGSSeq19D09 SSR 120.27 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXXI pPGSSeq19D09 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B03 seq19D09 SSR 145.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG02 pPGSSeq19D09 SSR 0 (cM) Automated name-based, Automated name-based View Maps
TC7E04.B03 SSR 74.7 peanut - BB_A.ipaensis_x_A.magna_b - B03 TC7E04 SSR 140.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A03 TC7E04 SSR 25.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 TC7E04.A03 SSR 31.75 (cM) Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIII TC7E04 SSR 12.517 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB03 TC7E04 SSR 57.406 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - A08 TC7E04 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG09 TC7E04 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TC7E04 SSR 114 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIII TC7E04 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG03 TC7E04 SSR 88.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIII TC7E04 SSR 190.72 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXXI TC7E04 SSR 26.7 (cM) Automated name-based, Automated name-based View Maps
GM1502 SSR 78.36 peanut - AA_A.duranensis_x_A.duranensis_a - A03 GM1502 SSR 78.51 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXV GM1502 SSR 189.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXV GM1502 SSR 116.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXV GM1502 SSR 67.956 (cM) Automated name-based, Automated name-based View Maps
IPAHM93 SSR 95.06 No other positions
SC1003E1 SSR 103.96 No other positions
GM1762 SSR 133.86 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 GM1762 SSR 37.082 (cM) Automated name-based, Automated name-based View Maps
GM1733 SSR 139.92 peanut - TT_VG9514_x_TAG24_a - B03 GM1733 SSR 90.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 GM1733 SSR 39.876 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIV GM1733 SSR 90.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIV GM1733 SSR 90.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 GM1733 SSR 31.882 (cM) Automated name-based, Automated name-based View Maps
seq2C11.B03 SSR 140.92 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIII pPGPSeq2C11 SSR 124.89 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 seq2C11.A03 SSR 190.43 (cM) Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIII pPGPSeq2C11 SSR 136.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 seq2C11.A09 SSR 147.02 (cM) Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 Seq2C11 SSR 20.333 (cM) Automated name-based, Automated name-based View Maps
GM1883 SSR 141.32 peanut - TT_TAG24_x_GPBD4_a - AhXV GM1883 SSR 99.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXV GM1883 SSR 59.108 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXV GM1883 SSR 181.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 GM1883 SSR 86.224 (cM) Automated name-based, Automated name-based View Maps
ARS788 SSR 145.51 No other positions
seq14C11-1 SSR 146.75 No other positions
PM31 SSR 155.82 No other positions
PM3.B03 SSR 156.4 peanut - TT_TAG24_x_GPBD4_a - AhIII PM3 SSR 97.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 PM3.A03 SSR 190.43 (cM) Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A03 PM3 SSR 81.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIII PM3 SSR 25.815 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 PM3 SSR 20.333 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIII PM3 SSR 47.18 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG03 PM3 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - B03 PM3 SSR 30.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 PM3 SSR 70.2 (cM) Automated name-based, Automated name-based View Maps
RM14H12 SSR 159.3 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 RM14H12 SSR 65.662 (cM) Automated name-based, Automated name-based View Maps
seq9E08_B2 SSR 161.43 peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a - B03 seq9E08_B2 SSR 54.3 (cM) Automated name-based, Automated name-based View Maps