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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-TT_AhConsensus_GautamiPandey2012_a
(Reference Set)
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Correspondences
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Maps LG_AhIX
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_GautamiPandey2012_a [ View Map Set Info ]
Map Name: LG_AhIX
Map Start: 0 cM
Map Stop: 59.8 cM
Features by Type:
9 SSR
9 Total

Map Features

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Items 1 to 9 of 9.
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIX
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
pPGPSeq2B09 SSR 0 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 Seq2B09 SSR 82.559 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX pPGPSeq2B09 SSR 0 (cM) Automated name-based, Automated name-based View Maps
TC5A06 SSR 11.5 peanut - TT_TG26_x_GPBD4_a - AhIX TC5A06 SSR 22.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 TC5A06 SSR 70.133 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIX TC5A06 SSR 45.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX TC5A06 SSR 11.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A06 TC5A06 SSR 140.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB09 TC5A06 SSR 18.699 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX TC5A06 SSR 21.424 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 TC5A06 SSR 34.08 (cM) Automated name-based, Automated name-based View Maps
pPGSSeq14H06 SSR 16.2 peanut - TT_AhComposite_SujayGowda2012_a - AhIX pPGSseq14H06 SSR 24.364 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIX pPGSseq14H06 SSR 51.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX pPGSseq14H06 SSR 22.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 Seq14H06 SSR 62.998 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX pPGSSeq14H06 SSR 16.2 (cM) Automated name-based, Automated name-based View Maps
GM694 SSR 17.9 peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 GM694 SSR 43.49 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX GM694 SSR 17.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 GM694 SSR 61.872 (cM) Automated name-based, Automated name-based View Maps
PM436 SSR 21.3 peanut - TT_AhComposite_SujayGowda2012_a - AhIX PM436 SSR 26.271 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 PM436 SSR 46.89 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX PM436 SSR 21.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIX PM436 SSR 53.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 PM436 SSR 60.423 (cM) Automated name-based, Automated name-based View Maps
Lec1 SSR 23.2 peanut - TT_VG9514_x_TAG24_a - B09 Lec1 SSR 88.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 Lec1 SSR 49.54 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX Lec1 SSR 23.2 (cM) Automated name-based, Automated name-based View Maps
gi1107 SSR 24.3 peanut - TT_AhComposite_SujayGowda2012_a - AhIX gi1107 SSR 29.334 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX gi1107 SSR 24.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIX gi1107 SSR 56.8 (cM) Automated name-based, Automated name-based View Maps
pPGSSeq7G02 SSR 39.3 peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX pPGSSeq7G02 SSR 39.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 Seq7G02 SSR 80.176 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB09 Seq7G02 SSR 28.252 (cM) Automated name-based, Automated name-based View Maps
GM2120 SSR 59.8 peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 GM2120 SSR 73.06 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - B09 GM2120 SSR 97.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX GM2120 SSR 59.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIX GM2120 SSR 74.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX GM2120 SSR 40.542 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 GM2120 SSR 90.386 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX GM2120 SSR 35.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 GM2120 SSR 24.689 (cM) Automated name-based, Automated name-based View Maps