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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A01
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
Marker
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: A01
Map Start: 0 cM
Map Stop: 183.767 cM
Features by Type:
4 CAPS
190 SSR
5 STS
7 Marker
32 transposon
238 Total

Map Features

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Items 1 to 25 of 238.       of 10 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A01
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AhTE1000 transposon 0 No other positions
AHGS1403_c1 SSR 17.63 No other positions
AHGS1991_c1 SSR 31.566 No other positions
AHGS1895 SSR 31.737 No other positions
AHS3060_c1 SSR 32.249 No other positions
AHS0971 SSR 35.704 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AHS0971 SSR 0 (cM) Automated name-based, Automated name-based View Maps
TC2E05_c1 SSR 40.524 peanut - AA_A.duranensis_x_A.duranensis_a - A01 GM24 SSR 9.333 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 TC2E05_c2 SSR 59.282 (cM) Automated name-based View Maps
gi919 SSR 43.63 No other positions
AhTE0347_c1 transposon 44.992 No other positions
AHGS2027_c1 SSR 47.218 No other positions
IPAHM287_c1 SSR 47.68 No other positions
AHGS0219 SSR 49.378 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AHGS0219 SSR 19.085 (cM) Automated name-based, Automated name-based View Maps
AhTE1030 transposon 52.697 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AhTE1030 transposon 24.288 (cM) Automated name-based, Automated name-based View Maps
AhTE0986 transposon 54.803 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AhTE0986 transposon 20.223 (cM) Automated name-based, Automated name-based View Maps
AHS1326 SSR 56.252 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AHS1326 SSR 22.929 (cM) Automated name-based, Automated name-based View Maps
AHS0626_c1 SSR 56.839 No other positions
AHS2206 SSR 58.668 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AHS2206 SSR 25.831 (cM) Automated name-based, Automated name-based View Maps
AhTE0294 transposon 60.445 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AhTE0294 transposon 31.572 (cM) Automated name-based, Automated name-based View Maps
AhTE0188 transposon 60.886 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AhTE0188 transposon 29.465 (cM) Automated name-based, Automated name-based View Maps
RN25H06 SSR 61.488 peanut - AA_A.duranensis_x_A.stenosperma_d - A01 RN25H06 SSR 22.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA01 RN25H06 SSR 4.705 (cM) Automated name-based, Automated name-based View Maps
AHGS2167_c1 SSR 62.722 No other positions
AHGS1193_c1 SSR 62.732 No other positions
AHGS1647_c1 SSR 62.869 No other positions
AHS0405 SSR 63.559 peanut - AA_A.duranensis_x_A.stenosperma_b - AA01 AHS0405 SSR 6.699 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AHS0405 SSR 30.407 (cM) Automated name-based, Automated name-based View Maps
AHS0592 SSR 64.517 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AHS0592 SSR 32.252 (cM) Automated name-based, Automated name-based View Maps