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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A02
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
Marker
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: A02
Map Start: 0 cM
Map Stop: 78.64 cM
Features by Type:
3 CAPS
111 SSR
5 Marker
7 transposon
126 Total

Map Features

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Items 1 to 25 of 126.       of 6 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AhTE0486 transposon 0 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA02 AhTE0486 transposon 0 (cM) Automated name-based, Automated name-based View Maps
AHGS2490_c1 SSR 2.216 No other positions
AHGS1677_c1 SSR 7.966 No other positions
499367 Marker 11.142 No other positions
AHS0327 SSR 12.177 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA02 AHS0327 SSR 23.964 (cM) Automated name-based, Automated name-based View Maps
498998 Marker 13.926 No other positions
AHS2463 SSR 16.225 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA02 AHS2463 SSR 15.918 (cM) Automated name-based, Automated name-based View Maps
AHGS1289_c1 SSR 17.772 No other positions
TC42A05 SSR 18.145 peanut - AA_A.duranensis_x_A.stenosperma_b - AA02 TC42A05 SSR 0.409 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA02 TC42A05 SSR 14.565 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TC42A05 SSR 10.7 (cM) Automated name-based, Automated name-based View Maps
AHGS1374 SSR 19.167 No other positions
Seq11H01_c1 SSR 19.737 No other positions
AhTE0465 transposon 24.351 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA02 AhTE0465 transposon 33.907 (cM) Automated name-based, Automated name-based View Maps
AHS0519 SSR 25.416 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA02 AHS0519 SSR 34.402 (cM) Automated name-based, Automated name-based View Maps
RGA18 Marker 26.496 No other positions
AHS0314_c1 SSR 26.842 No other positions
PM230 SSR 26.945 peanut - TT_AhConsensus_GautamiFonceka2012_a - A02 PM230 SSR 47.54 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A02 PM230 SSR 201.5 (cM) Automated name-based, Automated name-based View Maps
AHGS1940_c1 SSR 28.801 No other positions
AHGS0655 SSR 29.549 No other positions
Seq16C03_c1 SSR 29.808 No other positions
RN20C10_c1 SSR 30.007 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B02 RN20C10_c2 SSR 50.144 (cM) Automated name-based View Maps
AhTE0837 transposon 30.737 No other positions
AHGS1183_c1 SSR 30.912 No other positions
AHGS2345 SSR 31.672 peanut - AA_A.duranensis_x_A.stenosperma_b - AA02 AHGS2345 SSR 12.044 (cM) Automated name-based, Automated name-based View Maps
GM695 SSR 32.168 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhII GM695 SSR 48.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG14 GM695 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A02 GM695 SSR 43.99 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG02 GM695 SSR 4.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG15 GA166 SSR 27.7 (cM) Automated name-based, Automated name-based View Maps
AHGS1695 SSR 32.405 No other positions