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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A08
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
Marker
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: A08
Map Start: 0 cM
Map Stop: 126.324 cM
Features by Type:
2 CAPS
130 SSR
3 STS
7 Marker
25 transposon
167 Total

Map Features

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Items 1 to 25 of 167.       of 7 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A08
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AHGS1270 SSR 0 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA08 AHGS1270 SSR 11.977 (cM) Automated name-based, Automated name-based View Maps
AHGS1094_c1 SSR 1.648 No other positions
TC4G06 SSR 4.444 peanut - AA_A.duranensis_x_A.duranensis_a - A08 GM58 SSR 48.978 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 TC4G06 SSR 26.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA08 TC4G06 SSR 0 (cM) Automated name-based, Automated name-based View Maps
AHGS2490_c2 SSR 5.567 No other positions
AHGS2660 SSR 6.436 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA08 AHGS2660 SSR 2.282 (cM) Automated name-based, Automated name-based View Maps
AHGS1574 SSR 6.734 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA08 AHGS1574 SSR 2.839 (cM) Automated name-based, Automated name-based View Maps
GM2788 SSR 7.247 peanut - TT_AhConsensus_GautamiFonceka2012_a - A08 GM2788 SSR 3.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 GM2788 SSR 56.623 (cM) Automated name-based, Automated name-based View Maps
AHGS1947_c2 SSR 9.578 No other positions
AHGS2607_c1 SSR 10.01 No other positions
TC11F12_c2 SSR 10.303 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B07 TC11F12_c3 SSR 104.778 (cM) Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 TC11F12_c1 SSR 61.911 (cM) Automated name-based View Maps
AhTE0227 transposon 10.914 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA08 AhTE0227 transposon 7.408 (cM) Automated name-based, Automated name-based View Maps
AHS1587 SSR 11.412 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA08 AHS1587 SSR 6.541 (cM) Automated name-based, Automated name-based View Maps
AHGS1716_c1 SSR 11.458 No other positions
AHS1774 SSR 12.272 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA08 AHS1774 SSR 7.455 (cM) Automated name-based, Automated name-based View Maps
CP09D07 Marker 13.485 No other positions
TC9B08 SSR 13.818 peanut - TT_TAG24_x_GPBD4_a - AhXIX TC9B08 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA08 TC9B08 SSR 10.339 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhX TC9B08 SSR 25.42 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG08 TC9B08 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A08 TC9B08 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A01 TC9B08 SSR 152.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG03 Ah2TC9B08 SSR 56.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG08 TC9B08 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXIX TC9B08 SSR 8.61 (cM) Automated name-based, Automated name-based View Maps
CP04D05 Marker 15.609 No other positions
AHGS1196_c1 SSR 16.953 No other positions
AHGS1525 SSR 17.772 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA08 AHGS1525 SSR 9.431 (cM) Automated name-based, Automated name-based View Maps
AHGS2591_c1 SSR 19.643 No other positions
RM7E04_c1 SSR 19.787 No other positions
AHS0972 SSR 19.804 peanut - AA_A.duranensis_x_A.stenosperma_b - AA08 AHS0972 SSR 6.208 (cM) Automated name-based, Automated name-based View Maps
AHGS2131_c2 SSR 19.899 No other positions
AHGS3150 SSR 19.899 peanut - AA_A.duranensis_x_A.stenosperma_b - AA08 AHGS3150 SSR 6.16 (cM) Automated name-based, Automated name-based View Maps
Leg924 Marker 22.842 peanut - AA_A.duranensis_x_A.stenosperma_a - A08 Leg924 Marker 211.3 (cM) Automated name-based, Automated name-based View Maps