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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps A09
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
Marker
SNP
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: A09
Map Start: 0 cM
Map Stop: 126.543 cM
Features by Type:
4 CAPS
1 SNP
153 SSR
9 STS
5 Marker
22 transposon
194 Total

Map Features

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Items 1 to 25 of 194.       of 8 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A09
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM1609 SSR 0 peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIII GM1609 SSR 248.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG13 GM1609 SSR 8.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 GM1609 SSR 17.346 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 GM1609 SSR 267.42 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXIII GM1609 SSR 169.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIII GM1609 SSR 236.19 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXIII GM1609 SSR 85.648 (cM) Automated name-based, Automated name-based View Maps
AhTE0815 transposon 11.416 No other positions
AhTE0532 transposon 12.397 No other positions
TC3B02 Marker 12.532 No other positions
TC3E02_c2 SSR 17.633 peanut - AA_A.duranensis_x_A.duranensis_a - A03 GM32 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 TC3E02_c1 SSR 18.488 (cM) Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 TC3E02_c3 SSR 6.947 (cM) Automated name-based View Maps
Lec1_c1 SSR 25.16 peanut - TT_VG9514_x_TAG24_a - B09 Lec1 SSR 88.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 Lec1_c2 SSR 65.805 (cM) Automated name-based View Maps
AHS2549 SSR 27.933 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA09 AHS2549 SSR 80.199 (cM) Automated name-based, Automated name-based View Maps
AHGS2341_c1 SSR 28.42 No other positions
Seq8D09_c1 SSR 28.872 No other positions
PM346 SSR 29.864 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIII PM346 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 PM346 SSR 2.28 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIII PM346 SSR 0 (cM) Automated name-based, Automated name-based View Maps
AHGS2685_c1 SSR 30.556 No other positions
AHGS2493_c1 SSR 30.994 No other positions
AHS2537 SSR 31.217 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA09 AHS2537 SSR 81.523 (cM) Automated name-based, Automated name-based View Maps
gi1107_c1 SSR 32.438 No other positions
GM1878_c2 SSR 34.231 No other positions
AHS1121 SSR 35.06 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA09 AHS1121 SSR 77.276 (cM) Automated name-based, Automated name-based View Maps
GM2407 Marker 35.068 No other positions
AHGS2320_c1 SSR 35.877 No other positions
AhTE0707 transposon 37.85 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA09 AhTE0707 transposon 70.208 (cM) Automated name-based, Automated name-based View Maps
AhTE0794 transposon 40.256 No other positions
AhTE0888 transposon 42.324 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA09 AhTE0888 transposon 69.039 (cM) Automated name-based, Automated name-based View Maps
AhTE0922 transposon 44.282 No other positions
GM2259 SSR 46.522 peanut - TT_ICGS44_x_ICGS76_a - LG12 GM2259 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXIII GM2259 SSR 33.015 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXIII GM2259 SSR 88.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIII GM2259 SSR 166.19 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 GM2259 SSR 188.32 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIII GM2259 SSR 178.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXIII GM2259 SSR 59.5 (cM) Automated name-based, Automated name-based View Maps
AHGS1366 SSR 46.611 No other positions
PM170 SSR 49.361 peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 PM170 SSR 13.89 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A09 PM170 SSR 24.6 (cM) Automated name-based, Automated name-based View Maps