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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
Marker
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: A10
Map Start: 0 cM
Map Stop: 131.119 cM
Features by Type:
7 CAPS
140 SSR
6 STS
3 Marker
16 transposon
172 Total

Map Features

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Items 1 to 25 of 172.       of 7 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AHGS1803_c2 SSR 0 No other positions
AHGS1632 SSR 16.767 No other positions
AhTE0797 transposon 25.407 No other positions
AhTE0524 transposon 27.036 No other positions
GM1788 SSR 31.782 peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM1788 SSR 69.749 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 GM1788 SSR 2.58 (cM) Automated name-based, Automated name-based View Maps
AhTE0695 transposon 32.652 No other positions
AHGS1888 SSR 51.918 No other positions
TC24E01_c1 SSR 64.524 No other positions
GM692 SSR 64.911 peanut - TT_TAG24_x_ICGV86031_a - LG_AhXII GM692 SSR 91.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG12 GM692 SSR 88.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - A10 GM692 SSR 50.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXVI GM692 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVI GM692 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 GA161 SSR 77.88 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXII GM692 SSR 158.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG1 GA161 SSR 16.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 GM692 SSR 130.41 (cM) Automated name-based, Automated name-based View Maps
GM2411 SSR 68.836 peanut - TT_Tifrunner_x_GT-C20_b - LG1 GM2411 SSR 55.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 GM2411 SSR 57.61 (cM) Automated name-based, Automated name-based View Maps
AHGS0648_c2 SSR 70.892 No other positions
AHGS1314 SSR 71.596 No other positions
ARS775 STS 72.235 No other positions
AHGS1701_c1 SSR 72.531 No other positions
AC3F07_c1 SSR 74.398 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B10 AC3F07_c2 SSR 70.193 (cM) Automated name-based View Maps
AhTE0616 transposon 74.519 No other positions
AHGS2787 SSR 75.343 No other positions
PMc468 SSR 75.579 peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 PMc468 SSR 97.5 (cM) Automated name-based, Automated name-based View Maps
AHGS2024 SSR 76.531 No other positions
ARS812 STS 77.632 No other positions
Seq18C02 SSR 78.107 No other positions
AHGS3232_c2 SSR 78.148 No other positions
AHGS1961_c1 SSR 79.625 No other positions
IPAHM352_c1 SSR 79.693 No other positions
PM145 SSR 80.632 peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 PM145 SSR 78.73 (cM) Automated name-based, Automated name-based View Maps