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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps B04
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: B04
Map Start: 0 cM
Map Stop: 132.084 cM
Features by Type:
153 SSR
1 STS
8 Marker
46 transposon
208 Total

Map Features

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Items 1 to 25 of 208.       of 9 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AHGS1789_c1 SSR 0 No other positions
AHGS1432_c2 SSR 0.373 No other positions
AHGS2793_c2 SSR 3.533 No other positions
AhTE0654 transposon 5.046 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB04 AhTE0654 transposon 34.424 (cM) Automated name-based, Automated name-based View Maps
AHGS2322_c2 SSR 8.694 No other positions
AHGS2393_c2 SSR 12.748 No other positions
AHGS2442_c2 SSR 22.117 No other positions
AHGS2539_c2 SSR 25.294 No other positions
AHS0144 SSR 28.548 No other positions
AHGS2531_c2 SSR 29.655 No other positions
AHGS1886_c2 SSR 31.287 No other positions
Seq4H11_c3 SSR 33.622 No other positions
AHGS1761_c2 SSR 33.875 No other positions
AHGS2960 SSR 35.527 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB04 AHGS2960 SSR 57.875 (cM) Automated name-based, Automated name-based View Maps
EM42 SSR 35.861 No other positions
AHS1741_c2 SSR 39.43 No other positions
AhTE0908 transposon 39.761 No other positions
AHGS2638_c2 SSR 39.905 No other positions
AhTE0750_c1 transposon 41.08 No other positions
AHGS2643_c2 SSR 42.092 No other positions
AHS2312_c2 SSR 42.212 No other positions
TC11H06 SSR 43.218 peanut - TT_ICGS44_x_ICGS76_a - LG15 TC11H06 SSR 42.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXVII TC11H06 SSR 128.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV TC11H06 SSR 44.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B04 TC11H06 SSR 37.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVII TC11H06 SSR 37.62 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXVII TC11H06 SSR 93 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG05 TC11H06 SSR 238 (cM) Automated name-based, Automated name-based View Maps
TC7G10_c2 SSR 43.914 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A04 TC7G10_c1 SSR 26.823 (cM) Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 GM76 SSR 32.569 (cM) Automated name-based, Automated name-based View Maps
AhTE0909 transposon 45.855 No other positions
GM1089 Marker 45.981 No other positions