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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
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Correspondences
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Maps B05
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: B05
Map Start: 0 cM
Map Stop: 112.694 cM
Features by Type:
142 SSR
1 STS
2 Marker
24 transposon
169 Total

Map Features

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Items 1 to 25 of 169.       of 7 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM657 SSR 0 peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 GM657 SSR 145.48 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIV GM657 SSR 110.27 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIV GM657 SSR 86.1 (cM) Automated name-based, Automated name-based View Maps
TC1G04_c2 SSR 7.137 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B10 TC1G04_c3 SSR 57.444 (cM) Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 TC1G04_c1 SSR 99.006 (cM) Automated name-based View Maps
IPAHM352_c2 SSR 15.637 No other positions
AHGS2014 SSR 16.382 No other positions
RN34H10_c2 SSR 16.866 No other positions
AHGS2791_c2 SSR 17.869 No other positions
GM1539 SSR 17.926 peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 GM1539 SSR 0 (cM) Automated name-based, Automated name-based View Maps
IPAHM287_c3 SSR 20.249 No other positions
GM2084 SSR 21.271 peanut - TT_TG26_x_GPBD4_a - AhIV GM2084 SSR 116.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG1 GM2084 SSR 8.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIV GM2084 SSR 52.031 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 GM2084 SSR 57.939 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 GM2084 SSR 8.09 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIV GM2084 SSR 87.3 (cM) Automated name-based, Automated name-based View Maps
AhTE0356 transposon 22.772 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB05 AhTE0356 transposon 10.626 (cM) Automated name-based, Automated name-based View Maps
AHGS1457 SSR 24.325 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB05 AHGS1457 SSR 13.883 (cM) Automated name-based, Automated name-based View Maps
GM2769 SSR 25.312 peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM2769 SSR 69.451 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 GM2769 SSR 6.42 (cM) Automated name-based, Automated name-based View Maps
IPAHM75_c2 SSR 25.315 No other positions
AhTE0119 transposon 26.686 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB05 AhTE0119 transposon 12.69 (cM) Automated name-based, Automated name-based View Maps
Ai119F10 STS 28.603 No other positions
GM2137 SSR 29.823 peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM2137 SSR 69.081 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG8 GM2137 SSR 29.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 GM2137 SSR 7.62 (cM) Automated name-based, Automated name-based View Maps
AhM082 SSR 30.559 No other positions
AhM005 SSR 31.001 No other positions
GM1555 SSR 31.984 peanut - TT_TG26_x_GPBD4_a - AhIV GM1555 SSR 35.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIV GM1555 SSR 31.831 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 GM1555 SSR 74.81 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIV GM1555 SSR 47.9 (cM) Automated name-based, Automated name-based View Maps
Seq9G05 SSR 32.048 peanut - TT_TAG24_x_ICGV86031_a - LG_AhIV pPGSSeq9G05 SSR 10.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG04 pPGSSeq9G05 SSR 156.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIV pPGSSeq9G05 SSR 178.47 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 seq9G05 SSR 24.48 (cM) Automated name-based, Automated name-based View Maps
AHGS1946_c2 SSR 33.021 No other positions
AhTE0750_c2 transposon 33.976 No other positions
IPAHM73 SSR 34.033 peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 IPAHM73 SSR 9.83 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG8 IPAHM73 SSR 41.4 (cM) Automated name-based, Automated name-based View Maps
AhTE0763 transposon 35.217 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB05 AhTE0763 transposon 22.113 (cM) Automated name-based, Automated name-based View Maps
AHGS1228 SSR 35.275 peanut - BB_A.ipaensis_x_A.magna_a - BB05 AHGS1228 SSR 5.249 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS1228 SSR 37.5 (cM) Automated name-based, Automated name-based View Maps