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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
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Correspondences
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Maps B07
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: B07
Map Start: 0 cM
Map Stop: 179.082 cM
Features by Type:
135 SSR
1 STS
3 Marker
23 transposon
162 Total

Map Features

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Items 1 to 25 of 162.       of 7 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B07
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AHGS2728 SSR 0 No other positions
AhTE0996 transposon 8.059 No other positions
RN13D04_c2 SSR 9.689 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 RN13D04_c1 SSR 32.939 (cM) Automated name-based View Maps
AHS2891 SSR 11.728 No other positions
AHGS3217 SSR 13.306 No other positions
AhTE0896 transposon 16.413 No other positions
GM1953 SSR 18.599 peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM1953 SSR 8.63 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG2 GM1953 SSR 100.7 (cM) Automated name-based, Automated name-based View Maps
AhTE0047 transposon 21.742 No other positions
Seq2E06_c3 SSR 24.03 No other positions
GM2156 SSR 28.679 peanut - TT_Tifrunner_x_GT-C20_b - LG2 GM2156 SSR 87.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 GM2156 SSR 15.454 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM2156 SSR 18.43 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXVIII GM2156 SSR 102.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII GM2156 SSR 102.6 (cM) Automated name-based, Automated name-based View Maps
AHGS2049 SSR 34.036 No other positions
TC41A11 Marker 40.203 No other positions
Seq19G07_c2 SSR 43.533 No other positions
GM2745 SSR 44.711 peanut - TT_Tifrunner_x_GT-C20_b - LG2 GM2745 SSR 68 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXVIII GM2745 SSR 55.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII GM2745 SSR 55.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM2745 SSR 29.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG18 GM2745 SSR 0.3 (cM) Automated name-based, Automated name-based View Maps
TC1A02_c4 SSR 46.371 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B06 TC1A02_c3 SSR 89.598 (cM) Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 TC1A02_c1 SSR 63.576 (cM) Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 TC1A02_c2 SSR 25.97 (cM) Automated name-based View Maps
GM2744 SSR 46.547 peanut - TT_Tifrunner_x_GT-C20_b - LG2 GM2744 SSR 63.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM2744 SSR 32.21 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII GM2744 SSR 55.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXVIII GM2744 SSR 55.5 (cM) Automated name-based, Automated name-based View Maps
GM2067 SSR 48.29 peanut - TT_AhComposite_SujayGowda2012_a - AhXVIII GM2067 SSR 46.18 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXVIII GM2067 SSR 65 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM2067 SSR 24.78 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG2 GM2067 SSR 79.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXVIII GM2067 SSR 68.7 (cM) Automated name-based, Automated name-based View Maps
PM69 Marker 48.735 No other positions
Seq5D05_c3 SSR 50.184 No other positions
AHS0771 SSR 50.257 peanut - BB_A.ipaensis_x_A.magna_a - BB07 AHS0771 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B07 AHS0771 SSR 0 (cM) Automated name-based, Automated name-based View Maps
GM2073 SSR 50.507 peanut - TT_VG9514_x_TAG24_a - B07 GM2073 SSR 88.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 GM2073 SSR 4.032 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM2073 SSR 24.78 (cM) Automated name-based, Automated name-based View Maps
AHS0568 SSR 52.45 No other positions
AhTE0282 transposon 53.053 peanut - BB_A.ipaensis_x_A.magna_b - B07 AhTE0282 transposon 3.1 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB07 AhTE0282 transposon 3.147 (cM) Automated name-based, Automated name-based View Maps
GM1254 SSR 54.465 peanut - TT_Tifrunner_x_GT-C20_b - LG2 GM1254 SSR 58.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM1254 SSR 37.21 (cM) Automated name-based, Automated name-based View Maps
Seq5D05_c4 SSR 55.56 No other positions