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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps B1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-BAC
SSR-enriched-cDNA
SSR-enriched-genomic
SSR-methyl-filtrated-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: B1
Map Start: 0 cM
Map Stop: 130.83 cM
Features by Type:
19 EST
1 SSR-BAC
4 SSR-enriched-cDNA
16 SSR-enriched-genomic
1 SSR-methyl-filtrated-genomic
41 Total

Map Features

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Items 1 to 25 of 41.       of 2 | Next
white clover - TrZhang2007 - B1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Mt1D06 SSR-BAC 0 No other positions
AW272 EST 2.7 white clover - TrZhang2007 - G2 AW272 EST 77.93 (cM) Automated name-based View Maps
RCS1310 SSR-enriched-cDNA 3.97 No other positions
RCS1325 SSR-enriched-cDNA 5.32 No other positions
ats072 SSR-enriched-genomic 14.16 white clover - TrZhang2007 - E2 ats072 SSR-enriched-genomic 120.46 (cM) Automated name-based View Maps
RCS0992 SSR-enriched-genomic 17.15 No other positions
ats075 SSR-enriched-genomic 18.71 No other positions
RCS3961 EST 20 No other positions
RCS6981 EST 27.05 No other positions
RCS4115 EST 35.52 No other positions
RCS5804 SSR-enriched-genomic 37 No other positions
RCS3122 SSR-enriched-genomic 40.81 No other positions
TRSSRA01C10 SSR-enriched-genomic 47.35 No other positions
RCS2448 SSR-enriched-genomic 51.43 No other positions
RCS1157 SSR-enriched-genomic 53.48 No other positions
RCS6109 EST 54.86 No other positions
BI74 EST 56.5 No other positions
RCS4046 EST 56.72 white clover - TrZhang2007 - B2 RCS4046 EST 36.67 (cM) Automated name-based View Maps
BI116 EST 59.86 No other positions
RCS5903 SSR-methyl-filtrated-genomic 63.19 No other positions
RCS3744 EST 63.99 white clover - TrZhang2007 - B2 RCS3744 EST 18.49 (cM) Automated name-based View Maps
AW271 EST 68 No other positions
ats041 SSR-enriched-genomic 74.21 No other positions
RCS3084 SSR-enriched-genomic 74.99 white clover - TrZhang2007 - E2 RCS3084 SSR-enriched-genomic 104.52 (cM) Automated name-based View Maps
BG232 EST 75.42 No other positions