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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps C2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-enriched-cDNA
SSR-enriched-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: C2
Map Start: 0 cM
Map Stop: 114.57 cM
Features by Type:
18 EST
4 SSR-enriched-cDNA
10 SSR-enriched-genomic
32 Total

Map Features

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Items 1 to 25 of 32.       of 2 | Next
white clover - TrZhang2007 - C2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
RCS6954 EST 0 white clover - TrZhang2007 - C1 RCS6954 EST 42.27 (cM) Automated name-based View Maps
RCS1224 SSR-enriched-cDNA 9.21 white clover - TrZhang2007 - B2 RCS1224 SSR-enriched-cDNA 40.47 (cM) Automated name-based View Maps
RCS6705 EST 13.01 No other positions
prs367 EST 15 No other positions
RCS5147 EST 17.19 No other positions
RCS6306 EST 21.14 white clover - TrZhang2007 - C1 RCS6306 EST 8.9 (cM) Automated name-based View Maps
RCS6916 EST 25.01 white clover - TrZhang2007 - C1 RCS6916 EST 33.03 (cM) Automated name-based View Maps
RCS1327 SSR-enriched-cDNA 26.37 No other positions
RCS5622 SSR-enriched-genomic 31.25 No other positions
RCS6502 EST 31.68 No other positions
BF219 EST 32.16 No other positions
RCS5576 SSR-enriched-genomic 33.72 white clover - TrZhang2007 - E1 RCS5576 SSR-enriched-genomic 110.58 (cM) Automated name-based View Maps
RCS2510 SSR-enriched-cDNA 39.33 No other positions
AW64 EST 42.42 No other positions
RCS3384 SSR-enriched-cDNA 46.77 white clover - TrZhang2007 - H1 RCS3384 SSR-enriched-cDNA 63.86 (cM) Automated name-based View Maps
RCS5831 SSR-enriched-genomic 52.8 No other positions
RCS5902 SSR-enriched-genomic 55.51 No other positions
BE73 EST 58.63 white clover - TrZhang2007 - G1 BE73 EST 68.67 (cM) Automated name-based View Maps
white clover - TrZhang2007 - C1 BE73 EST 54.03 (cM) Automated name-based View Maps
RCS2308 SSR-enriched-genomic 60.32 No other positions
RCS5457 SSR-enriched-genomic 62.26 No other positions
AW123 EST 68.96 No other positions
BG211 EST 75.19 No other positions
RCS5611 SSR-enriched-genomic 79.85 No other positions
RCS4976 EST 81.13 No other positions
RCS6995 EST 82.68 white clover - TrZhang2007 - C1 RCS6995 EST 66.06 (cM) Automated name-based View Maps