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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
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Maps D1
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-enriched-cDNA
SSR-enriched-genomic
SSR-methyl-filtrated-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: D1
Map Start: 0 cM
Map Stop: 141.49 cM
Features by Type:
13 EST
5 SSR-enriched-cDNA
14 SSR-enriched-genomic
2 SSR-methyl-filtrated-genomic
34 Total

Map Features

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Items 1 to 25 of 34.       of 2 | Next
white clover - TrZhang2007 - D1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BG166 EST 0 No other positions
AW285 EST 5.03 No other positions
RCS3587 SSR-methyl-filtrated-genomic 11.9 white clover - TrZhang2007 - D2 RCS3587 SSR-methyl-filtrated-genomic 56.95 (cM) Automated name-based View Maps
prs427 EST 18.94 No other positions
TRSSRA02G08 SSR-enriched-genomic 21.92 No other positions
RCS3987 EST 23.03 No other positions
TRSSRA02A01 SSR-enriched-genomic 31.97 No other positions
ats055 SSR-enriched-genomic 35.38 white clover - TrZhang2007 - B2 ats055 SSR-enriched-genomic 78.31 (cM) Automated name-based View Maps
ats113 SSR-enriched-genomic 37.96 white clover - TrZhang2007 - D2 ats113 SSR-enriched-genomic 133 (cM) Automated name-based View Maps
TRSSRA06B07 SSR-enriched-genomic 42.14 No other positions
TRSSRA02F09 SSR-enriched-genomic 45.47 No other positions
RCS1735 SSR-enriched-cDNA 46.79 white clover - TrZhang2007 - D2 RCS1735 SSR-enriched-cDNA 93.25 (cM) Automated name-based View Maps
RCS1839 SSR-enriched-cDNA 50.93 white clover - TrZhang2007 - D2 RCS1839 SSR-enriched-cDNA 89.7 (cM) Automated name-based View Maps
RCS4174 EST 56.01 white clover - TrZhang2007 - B2 RCS4174 EST 102.23 (cM) Automated name-based View Maps
AL46 EST 57.92 white clover - TrZhang2007 - D2 AL46 EST 99.42 (cM) Automated name-based View Maps
RCS3962 EST 64.19 No other positions
RCS3608 SSR-enriched-genomic 67.74 No other positions
RCS3811 EST 71.38 white clover - TrZhang2007 - D2 RCS3811 EST 116.42 (cM) Automated name-based View Maps
BI76 EST 77.06 No other positions
BI103 EST 83.19 white clover - TrZhang2007 - D2 BI103 EST 76.1 (cM) Automated name-based View Maps
RCS5938 SSR-enriched-genomic 85.41 No other positions
RCS3568 SSR-methyl-filtrated-genomic 87.37 white clover - TrZhang2007 - D2 RCS3568 SSR-methyl-filtrated-genomic 130.29 (cM) Automated name-based View Maps
RCS1616 SSR-enriched-cDNA 93.81 white clover - TrZhang2007 - H1 RCS1616 SSR-enriched-cDNA 0 (cM) Automated name-based View Maps
RCS3315 SSR-enriched-genomic 94.28 No other positions
RCS5709 SSR-enriched-genomic 97.41 No other positions