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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps F2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-BAC
SSR-enriched-cDNA
SSR-enriched-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: F2
Map Start: 0 cM
Map Stop: 83.39 cM
Features by Type:
7 EST
1 SSR-BAC
3 SSR-enriched-cDNA
8 SSR-enriched-genomic
19 Total

Map Features

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Items 1 to 19 of 19.
white clover - TrZhang2007 - F2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
MTIC304 EST 9.07 No other positions
RCS2499 SSR-enriched-cDNA 18.82 white clover - TrZhang2007 - E1 RCS2499 SSR-enriched-cDNA 56.72 (cM) Automated name-based View Maps
Mt1D10 SSR-BAC 25.36 No other positions
RCS2845 SSR-enriched-cDNA 43.48 No other positions
prs645 EST 48.39 white clover - TrZhang2007 - F1 prs645 EST 83.67 (cM) Automated name-based View Maps
RCS2383 SSR-enriched-genomic 50.87 white clover - TrZhang2007 - F1 RCS2383 SSR-enriched-genomic 10.13 (cM) Automated name-based View Maps
RCS2202 SSR-enriched-genomic 60.77 white clover - TrZhang2007 - C1 RCS2202 SSR-enriched-genomic 20.95 (cM) Automated name-based View Maps
BG263 EST 65.79 No other positions
ats005 SSR-enriched-genomic 78.17 No other positions
prs653 EST 0 No other positions
RCS4165 EST 14.38 No other positions
RCS4189 EST 22.25 white clover - TrZhang2007 - G1 RCS4189 EST 8.02 (cM) Automated name-based View Maps
RCS2325 SSR-enriched-genomic 42.33 No other positions
TRSSRA03A06 SSR-enriched-genomic 47.16 No other positions
RCS3276 SSR-enriched-genomic 50.57 No other positions
RCS2667 SSR-enriched-genomic 53.12 No other positions
RCS0946 SSR-enriched-genomic 62.56 No other positions
RCS5023 EST 74.3 white clover - TrZhang2007 - F1 RCS5023 EST 115.71 (cM) Automated name-based View Maps
RCS2802 SSR-enriched-cDNA 83.39 white clover - TrZhang2007 - F1 RCS2802 SSR-enriched-cDNA 109.77 (cM) Automated name-based View Maps