LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set cowpea-VuCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps VuLG06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: cowpea - VuCookUCDavis2009 [ View Map Set Info ]
Map Name: VuLG06
Map Start: 0 cM
Map Stop: 57.74 cM
Features by Type:
35 SNP
35 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 35.       of 2 | Next
cowpea - VuCookUCDavis2009 - VuLG06
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
3_293_TOG910732_1_759 SNP 57.74 soybean - GmJGI8x - Gm07 TOG910732 TOG 30,284,889 - 30,287,053 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG910732 TOG 7,452,194 - 7,454,152 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG15 Ah2n_TOG910732_1 SNP 28.73 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG910732 SNP 4 (cM) Automated name-based, Automated name-based View Maps
3_082_TOG899411_1_88 SNP 57.74 common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG899411 SNP 3.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG899411 TOG 34,653,497 - 34,655,980 (cM) Automated name-based, Automated name-based View Maps
3_007_TOG898463_1_476 SNP 57.74 barrel medic - Mt3.0 - MtChr1 TOG898463 TOG 11,221,948 - 11,227,325 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG898463 SNP 0 (cM) Automated name-based, Automated name-based View Maps
4_195_TOG908191_2_473 SNP 55.77 peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TOG908191 SNP 45.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG908191 TOG 22,848,269 - 22,856,946 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP180 SNP 52.457 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG10 Ah2n_TOG908191_2 SNP 15.67 (cM) Automated name-based, Automated name-based View Maps
3_204_TOG909801_1_230 SNP 52.8 soybean - GmJGI8x - Gm03 TOG909801 TOG 2,993,161 - 2,995,456 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG909801 TOG 66,397,778 - 66,410,098 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG909801 SNP 12 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG909801_61 SNP 86.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG909801 TOG 6,085,412 - 6,118,658 (cM) Automated name-based, Automated name-based View Maps
3_275_TOG901841_2_559 SNP 49.15 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG901841_347 SNP 59.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP135 SNP 53.621 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG901841 TOG 35,556,508 - 35,559,040 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG901841_740 SNP 59.8 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG901841 SNP 38.4 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG901841 SNP 16.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG901841 TOG 11,199,976 - 11,203,333 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG901841_2 SNP 24.54 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG901841 TOG 19,828,432 - 19,835,391 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG901841 SNP 53.5 (cM) Automated name-based, Automated name-based View Maps
4_289_TOG915900_1_1565 SNP 48.82 soybean - GmJGI8x - Gm02 TOG915900 TOG 11,189,406 - 11,193,103 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG915900 TOG 35,564,629 - 35,566,860 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG915900 SNP 38.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG915900_1 SNP 23.91 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG915900 TOG 19,787,442 - 19,791,048 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG915900_270 SNP 59.8 (cM) Automated name-based, Automated name-based View Maps
3_221_TOG899062_2_98 SNP 47.84 soybean - GmJGI8x - Gm02 TOG899062 TOG 10,567,794 - 10,571,751 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG899062 TOG 24,736,588 - 24,738,758 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG899062 TOG 2,239,515 - 2,243,741 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG899062 SNP 33.5 (cM) Automated name-based, Automated name-based View Maps
4_127_TOG914913_2_682 SNP 46.52 soybean - GmJGI8x - Gm01 TOG914913 TOG 5,471,233 - 5,473,224 (cM) Automated name-based, Automated name-based View Maps
4_146_TOG896190_1_371 SNP 45.54 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG896190_917 SNP 53.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG896190 TOG 4,850,929 - 4,854,600 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG896190 SNP 37.2 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896190 SNP 42.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG896190_351 SNP 53.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896190 TOG 16,998,302 - 17,003,182 (cM) Automated name-based, Automated name-based View Maps
4_013_TOG896190_1_740 SNP 45.54 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG896190_917 SNP 53.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG896190 TOG 4,850,929 - 4,854,600 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG896190 SNP 37.2 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896190 SNP 42.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG896190_351 SNP 53.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896190 TOG 16,998,302 - 17,003,182 (cM) Automated name-based, Automated name-based View Maps
4_191_TOG896622_2_116 SNP 39.82 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG896622_294 SNP 52.2 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896622 TOG 41,659,819 - 41,667,956 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG896622 TOG 3,364,610 - 3,372,580 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896622 TOG 14,973,004 - 14,980,417 (cM) Automated name-based, Automated name-based View Maps
4_087_TOG896097_2_796 SNP 32.68 peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG896097_2 SNP 2.41 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG896097_1350 SNP 6.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896097 TOG 12,436,533 - 12,439,853 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG896097 TOG 1,613,178 - 1,616,011 (cM) Automated name-based, Automated name-based View Maps
3_067_TOG896930_2_308 SNP 30.05 barrel medic - Mt3.0 - MtChr5 TOG896930 TOG 11,460,940 - 11,474,223 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG896930_200 SNP 45.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP64 SNP 95.919 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG896930 TOG 1,003,562 - 1,006,479 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896930 SNP 46.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG896930 TOG 40,781,607 - 40,787,326 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG896930_258 SNP 45.1 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896930 TOG 47,004,450 - 47,009,690 (cM) Automated name-based, Automated name-based View Maps
4_197_TOG895871_2_102 SNP 29.07 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895871_254 SNP 45.8 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG895871 SNP 44.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP35 SNP 96.512 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895871 TOG 12,024,357 - 12,028,281 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895871_189 SNP 45.8 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG895871 TOG 46,733,016 - 46,735,985 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG895871_2 SNP 15.99 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG895871 TOG 40,585,120 - 40,588,357 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895871 SNP 46.9 (cM) Automated name-based, Automated name-based View Maps
4_052_TOG895871_2_164 SNP 29.07 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895871_254 SNP 45.8 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG895871 SNP 44.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP35 SNP 96.512 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895871 TOG 12,024,357 - 12,028,281 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895871_189 SNP 45.8 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG895871 TOG 46,733,016 - 46,735,985 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG895871_2 SNP 15.99 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG895871 TOG 40,585,120 - 40,588,357 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895871 SNP 46.9 (cM) Automated name-based, Automated name-based View Maps
3_042_TOG896172_2_59 SNP 28.41 barrel medic - Mt3.0 - MtChr5 TOG896172 TOG 11,338,018 - 11,438,111 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG896172 TOG 40,791,755 - 40,795,878 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896172 TOG 47,013,414 - 47,016,499 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG896172 SNP 44.6 (cM) Automated name-based, Automated name-based View Maps
3_255_TOG900080_1_381 SNP 24.42 lotus - LjKazusa200905 - LjChr2 TOG900080 TOG 49,669,862 - 49,670,923 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG900080 TOG 48,262,234 - 48,265,239 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG900080_139 SNP 43.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG900080 TOG 10,234,517 - 10,238,078 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG900080_1 SNP 28.84 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP117 SNP 88.938 (cM) Automated name-based, Automated name-based View Maps
3_188_TOG906701_2_1330 SNP 23.11 soybean - GmJGI8x - Gm11 TOG906701 TOG 6,359,202 - 6,360,546 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG906701 TOG 26,011,644 - 26,025,783 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG906701_506 SNP 39.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG906701 TOG 18,664,080 - 18,665,343 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG906701 TOG 49,888,864 - 49,890,382 (cM) Automated name-based, Automated name-based View Maps
3_030_TOG915674_2_808 SNP 22.46 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP199 SNP 83.853 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG915674_464 SNP 39.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG915674 TOG 48,818,830 - 48,822,619 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG915674 TOG 9,542,037 - 9,548,300 (cM) Automated name-based, Automated name-based View Maps
3_075_TOG895690_1_533 SNP 22.13 barrel medic - Mt3.0 - MtChr5 TOG895690 TOG 9,422,314 - 9,433,284 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895690_622 SNP 39.8 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG895690 SNP 39.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895690 SNP 43.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895690_763 SNP 39.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG895690_1 SNP 34.67 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG895690 TOG 6,398,564 - 6,401,809 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP29 SNP 83.283 (cM) Automated name-based, Automated name-based View Maps
3_073_TOG896091_2_152 SNP 22.13 soybean - GmJGI8x - Gm16 TOG896091 TOG 26,011,543 - 26,025,783 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP40 SNP 83.283 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG896091 TOG 18,661,226 - 18,667,201 (cM) Automated name-based, Automated name-based View Maps
4_319_TOG894510_2_86 SNP 21.3 soybean - GmJGI8x - Gm16 TOG894510 TOG 26,011,543 - 26,025,783 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894510 TOG 18,661,226 - 18,667,201 (cM) Automated name-based, Automated name-based View Maps
4_208_TOG894427_1_356 SNP 16.98 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG894427_253 SNP 27.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894427 TOG 8,052,882 - 8,057,624 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894427 TOG 49,830,656 - 49,834,889 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894427 TOG 19,801,588 - 19,805,443 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894427 TOG 52,967,195 - 52,970,724 (cM) Automated name-based, Automated name-based View Maps
3_345_TOG896943_1_377 SNP 16.66 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP66 SNP 64.054 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896943 TOG 7,845,410 - 7,850,291 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896943 TOG 53,285,436 - 53,288,468 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG896943_1 SNP 7.13 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896943 SNP 36.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG896943 TOG 50,071,811 - 50,075,246 (cM) Automated name-based, Automated name-based View Maps