LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set chickpea-CaCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaChr1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: chickpea - CaCookUCDavis2009 [ View Map Set Info ]
Map Name: CaChr1
Map Start: 0 cM
Map Stop: 113.9 cM
Features by Type:
85 SNP
85 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 85.       of 4 | Next
chickpea - CaCookUCDavis2009 - CaChr1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ca_TOG899684 SNP 113.9 soybean - GmJGI8x - Gm17 TOG899684 TOG 41,836,599 - 41,837,365 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG899684 TOG 2,262,576 - 2,264,486 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 3_120_TOG899684_1_675 SNP 3.97 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP110 SNP 50.054 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG899684 TOG 48,856,177 - 48,858,027 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG897469 SNP 112.3 cowpea - VuCookUCDavis2009 - VuLG09 4_171_TOG897469_1_701 SNP 5.61 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG897469 TOG 7,441,059 - 7,443,691 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG897469 TOG 41,460,717 - 41,462,665 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894099 SNP 108.1 lotus - LjKazusa200905 - LjChr5 TOG894099 TOG 1,772,062 - 1,775,462 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894099 TOG 6,019,283 - 6,022,548 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896166 SNP 106.5 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG896166_451 SNP 13.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 4_030_TOG896166_2_1230 SNP 64.09 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG896166 TOG 2,607,525 - 2,610,815 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902037 SNP 104 lotus - LjKazusa200905 - LjChr5 TOG902037 TOG 472,633 - 473,893 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG902037 TOG 40,376,754 - 40,378,430 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 3_141_TOG902037_2_229 SNP 9.89 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG902037 TOG 6,715,447 - 6,717,378 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG902037 TOG 6,149,555 - 6,150,636 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895163 SNP 100 soybean - GmJGI8x - Gm07 TOG895163 TOG 779,130 - 783,160 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG895163 TOG 64,676,756 - 64,680,685 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG895163 SNP 36.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG895163 TOG 5,956,968 - 5,962,924 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG895163 TOG 5,062,377 - 5,067,564 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG946905 SNP 98.4 pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG946905_685 SNP 66.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG946905_2 SNP 61.06 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG897521 SNP 92.2 peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG897521_1 SNP 42.68 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG897521_51 SNP 24.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP76 SNP 33.767 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG897521 SNP 60.4 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903088 SNP 92.2 lotus - LjKazusa200905 - LjChr5 TOG903088 TOG 8,770,884 - 8,773,130 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG903088_554 SNP 63 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG903088 TOG 2,022,869 - 2,025,662 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG903088 TOG 5,178,113 - 5,180,178 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG903088 TOG 13,045,579 - 13,047,553 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895229 SNP 89.7 cowpea - VuCookUCDavis2009 - VuLG09 3_093_TOG895229_1_588 SNP 21.66 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG895229 TOG 34,426,496 - 34,429,385 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG895229 TOG 16,013,795 - 16,016,620 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG913370 SNP 89.3 soybean - GmJGI8x - Gm11 TOG913370 TOG 14,480,649 - 14,484,387 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG917721 SNP 89.3 barrel medic - Mt3.0 - MtChr3 TOG917721 TOG 33,787,937 - 33,794,593 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG917721 TOG 6,211,414 - 6,218,377 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG917721 TOG 5,893,326 - 5,895,669 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG922889 SNP 87.3 soybean - GmJGI8x - Gm14 TOG922889 TOG 31,597,971 - 31,603,290 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG922889 TOG 1,118,978 - 1,127,696 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG922889_423 SNP 24.4 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG906662 SNP 85.3 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG906662_427 SNP 55.5 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_092_TOG906662_2_469 SNP 47.41 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG906662 TOG 28,667,356 - 28,670,435 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG906662 TOG 807,797 - 809,976 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG906662 TOG 2,174,052 - 2,176,648 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG906662 SNP 39.2 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895956 SNP 84.5 peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG895956_1 SNP 6.93 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG895956 TOG 1,912,513 - 1,916,539 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG913321 SNP 84.1 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG913321 SNP 55.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG913321 TOG 15,029,682 - 15,032,629 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 4_177_TOG913321_1_658 SNP 24.3 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG897326 SNP 83.3 soybean - GmJGI8x - Gm04 TOG897326 TOG 47,620,791 - 47,624,044 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG897326_92 SNP 133.1 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG897326 SNP 38.6 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG900323 SNP 83.3 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG900323_90 SNP 133.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG900323 TOG 47,620,791 - 47,624,044 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 4_113_TOG900323_2_821 SNP 39.45 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG915802 SNP 80 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG915802_913 SNP 66.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG16 Ah2n_TOG915802_1 SNP 14.71 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 SNP202 SNP 58.588 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TOG915802 SNP 46 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG915802 TOG 34,352,652 - 34,356,102 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903155 SNP 71.3 barrel medic - Mt3.0 - MtChr1 TOG903155 TOG 12,815,131 - 12,825,069 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_152_TOG903155_2_203 SNP 1.97 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_051_TOG903155_2_516 SNP 1.97 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG903155 SNP 8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG903155 TOG 35,331,293 - 35,332,898 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895060 SNP 71.3 soybean - GmJGI8x - Gm10 TOG895060 TOG 33,680,068 - 33,683,072 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG895060 TOG 28,403,486 - 28,407,180 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894171 SNP 70.9 cowpea - VuCookUCDavis2009 - VuLG10 3_146_TOG894171_2_715 SNP 1.97 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894171_1025 SNP 145.5 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894171_1067 SNP 145.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG04 Ah2n_TOG894171_2 SNP 4.56 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP3 SNP 12.555 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894171 TOG 41,377,729 - 41,380,871 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894171 SNP 8 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG927609 SNP 70.5 soybean - GmJGI8x - Gm20 TOG927609 TOG 41,672,570 - 41,681,871 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_311_TOG927609_2_472 SNP 13.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG927609_2 SNP 87.59 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG927609 SNP 21.5 (cM) Automated name-based, Automated name-based View Maps
Gm2084815_46 SNP 70.5 No other positions
CaESTSingleton16_277 SNP 69.3 No other positions