LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set pigeonpea-CcCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CcLG09
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: pigeonpea - CcCookUCDavis2009 [ View Map Set Info ]
Map Name: CcLG09
Map Start: 0 cM
Map Stop: 61.8 cM
Features by Type:
37 SNP
37 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 37.       of 2 | Next
pigeonpea - CcCookUCDavis2009 - CcLG09
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Cc_TOG918200_259 SNP 61.8 lotus - LjKazusa200905 - LjChr3 TOG918200 TOG 44,369,820 - 44,376,147 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_321_TOG918200_1_368 SNP 67.66 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG918200 TOG 50,384,744 - 50,390,981 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG918200 TOG 3,342,535 - 3,346,698 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG918200 SNP 63.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG11 Ah2n_TOG918200_1 SNP 2.28 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG911056_177 SNP 60.5 barrel medic - Mt3.0 - MtChr3 TOG911056 TOG 2,404,813 - 2,409,761 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG911056 TOG 50,498,714 - 50,501,395 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG911056 TOG 45,474,652 - 45,479,064 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG912629_354 SNP 60.5 barrel medic - Mt3.0 - MtChr3 TOG912629 TOG 2,438,042 - 2,443,692 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG11 Ah2n_TOG912629_2 SNP 2.28 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG912629 TOG 49,073,234 - 49,079,993 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG912629 SNP 41.7 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG918200_296 SNP 59.9 lotus - LjKazusa200905 - LjChr3 TOG918200 TOG 44,369,820 - 44,376,147 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_321_TOG918200_1_368 SNP 67.66 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG918200 TOG 50,384,744 - 50,390,981 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG918200 TOG 3,342,535 - 3,346,698 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG918200 SNP 63.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG11 Ah2n_TOG918200_1 SNP 2.28 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG903716_717 SNP 58.6 peanut - AA_A.duranensis_x_A.stenosperma_e - LG11 Ah2n_TOG903716_1 SNP 0 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG903716 SNP 42.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG903716 TOG 12,028,402 - 12,053,771 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG899476_210 SNP 54 soybean - GmJGI8x - Gm04 TOG899476 TOG 17,267,203 - 17,294,145 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_023_TOG899476_1_429 SNP 66.35 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG899476 TOG 1,229,347 - 1,232,683 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG899476 TOG 49,872,575 - 49,875,844 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894043_463 SNP 54 soybean - GmJGI8x - Gm04 TOG894043 TOG 17,191,635 - 17,204,662 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG894043 SNP 39.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894043 TOG 1,188,910 - 1,189,666 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG907169_424 SNP 54 lotus - LjKazusa200905 - LjChr0 TOG907169 TOG 25,470,814 - 25,471,656 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG907169 TOG 16,904,466 - 16,905,273 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG907169 SNP 39.3 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897988_633 SNP 54 soybean - GmJGI8x - Gm06 TOG897988 TOG 49,571,772 - 49,574,141 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG908863_319 SNP 52.1 soybean - GmJGI8x - Gm06 TOG908863 TOG 49,338,490 - 49,341,172 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_313_TOG908863_2_262 SNP 65.03 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG919799_359 SNP 50.2 soybean - GmJGI8x - Gm04 TOG919799 TOG 30,810,212 - 30,817,105 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG919799 TOG 18,501,619 - 18,502,725 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG919799 TOG 4,581,763 - 4,586,371 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG922166_264 SNP 49.6 peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG922166_2 SNP 25.26 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG922166 TOG 11,959,476 - 11,978,658 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG922166 TOG 11,097,591 - 11,101,068 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 4_164_TOG922166_2_186 SNP 61.41 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894941_394 SNP 49.6 soybean - GmJGI8x - Gm10 TOG894941 TOG 11,888,993 - 11,894,543 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894941 TOG 10,495,289 - 10,502,539 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_103_TOG894941_1_91 SNP 64.05 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897499_730 SNP 48.3 soybean - GmJGI8x - Gm08 TOG897499 TOG 11,509,454 - 11,511,362 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_285_TOG897499_2_206 SNP 60.43 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG897499 TOG 16,475,425 - 16,481,260 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG897499 SNP 85.7 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG900787_61 SNP 47.7 soybean - GmJGI8x - Gm15 TOG900787 TOG 48,942,184 - 48,943,175 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG900787 TOG 22,863,002 - 22,863,720 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG900787 SNP 49.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG900787 TOG 12,924,130 - 12,925,713 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG900787_1 SNP 51.84 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894619_735 SNP 45.7 lotus - LjKazusa200905 - LjChr3 TOG894619 TOG 18,254,684 - 18,257,335 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG894619_1 SNP 63.59 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894619 TOG 13,903,709 - 13,906,435 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG894619 SNP 35 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG894619 SNP 88.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894619 TOG 17,498,895 - 17,501,279 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894619_593 SNP 45.7 lotus - LjKazusa200905 - LjChr3 TOG894619 TOG 18,254,684 - 18,257,335 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG894619_1 SNP 63.59 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894619 TOG 13,903,709 - 13,906,435 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG894619 SNP 35 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG894619 SNP 88.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894619 TOG 17,498,895 - 17,501,279 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG908150_227 SNP 45 soybean - GmJGI8x - Gm08 TOG908150 TOG 13,951,471 - 13,953,479 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_283_TOG908150_1_278 SNP 57.46 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG908150 TOG 17,596,505 - 17,598,080 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG908150 TOG 18,135,601 - 18,158,337 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG908150 TOG 47,389,616 - 47,418,924 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG908150_1 SNP 51.84 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG899509_952 SNP 44.4 soybean - GmJGI8x - Gm08 TOG899509 TOG 14,106,552 - 14,111,180 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG899509 SNP 88.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG899509 TOG 47,102,330 - 47,107,790 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG899509 TOG 28,863,009 - 28,868,115 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG899509 SNP 35 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897323_775 SNP 44.4 soybean - GmJGI8x - Gm08 TOG897323 TOG 14,206,435 - 14,211,621 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG897323_1 SNP 74.11 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG897323 SNP 88.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG897323 TOG 46,885,725 - 46,892,557 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG897323 SNP 35 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG897323 TOG 7,135,467 - 7,140,085 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897323_349 SNP 44.4 soybean - GmJGI8x - Gm08 TOG897323 TOG 14,206,435 - 14,211,621 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG897323_1 SNP 74.11 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG897323 SNP 88.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG897323 TOG 46,885,725 - 46,892,557 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG897323 SNP 35 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG897323 TOG 7,135,467 - 7,140,085 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG910457_323 SNP 32.5 chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG910457 SNP 96 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG910457 TOG 8,673,777 - 8,685,693 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG910457 TOG 36,606,579 - 36,613,844 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG918864_45 SNP 31.9 barrel medic - Mt3.0 - MtChr2 TOG918864 TOG 21,812,832 - 21,816,180 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG918864 TOG 37,207,650 - 37,210,344 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 TOG918864 SNP 114.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP209 SNP 47.234 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG918864 SNP 33.4 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG918864 SNP 102.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG918864 TOG 37,859,079 - 37,862,442 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_307_TOG918864_1_1329 SNP 31.54 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG902560_315 SNP 26.6 chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG902560 SNP 60.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG902560_2 SNP 0 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG902560 TOG 68,603,251 - 68,607,047 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG902560 TOG 11,571,375 - 11,589,917 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG902560_464 SNP 26.6 chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG902560 SNP 60.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG902560_2 SNP 0 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG902560 TOG 68,603,251 - 68,607,047 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG902560 TOG 11,571,375 - 11,589,917 (cM) Automated name-based, Automated name-based View Maps