LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm03
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm03
Map Start: 0 cM
Map Stop: 47,781,076 cM
Features by Type:
106 Marker
204 SNP
75 SSR
103 TOG
488 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 488.       of 20 | Next
soybean - GmJGI8x - Gm03
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893949 TOG 34,566,280 - 34,570,866 lotus - LjKazusa200905 - LjChr3 TOG893949 TOG 11,293,645 - 11,297,781 (cM) Automated name-based, Automated name-based View Maps
TOG893978 TOG 46,076,955 - 46,080,343 soybean - GmJGI8x - Gm19 TOG893978 TOG 48,706,739 - 48,710,002 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG893978 TOG 15,057,528 - 15,060,873 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG893978 TOG 16,620,260 - 16,623,576 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG893978 TOG 33,647,396 - 33,650,280 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG893978 TOG 81,261,733 - 81,265,018 (cM) Automated name-based, Automated name-based View Maps
TOG894019 TOG 41,059,056 - 41,063,411 barrel medic - Mt3.0 - MtChr7 TOG894019 TOG 28,310,804 - 28,318,465 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894019 TOG 74,631,795 - 74,632,890 (cM) Automated name-based, Automated name-based View Maps
TOG894055 TOG 46,076,955 - 46,080,343 barrel medic - Mt3.0 - MtChr4 TOG894055 TOG 15,057,528 - 15,060,873 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894055 TOG 33,647,396 - 33,650,280 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894055 TOG 81,261,733 - 81,265,018 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG894055 TOG 48,706,739 - 48,710,002 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG894055 SNP 24.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894055 TOG 16,620,260 - 16,623,576 (cM) Automated name-based View Maps
TOG894060 TOG 47,617,917 - 47,620,062 barrel medic - Mt3.0 - MtChr8 TOG894060 TOG 6,010,545 - 6,012,502 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894060 TOG 26,552,691 - 26,556,977 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG894060 SNP 30 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894060_142 SNP 109.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_122_TOG894060_2_377 SNP 22.96 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894060 TOG 1,351,632 - 1,355,453 (cM) Automated name-based View Maps
TOG894078 TOG 44,857,439 - 44,862,268 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG894078 SNP 32.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG894078 TOG 47,437,637 - 47,442,376 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894078 TOG 31,747,430 - 31,752,799 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG916036 TOG 6,377,649 - 6,379,332 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894078 TOG 6,376,008 - 6,379,369 (cM) Automated name-based, Automated name-based View Maps
TOG894101 TOG 27,473,662 - 27,477,759 soybean - GmJGI8x - Gm16 TOG894101 TOG 10,994,254 - 10,998,025 (cM) Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG894101_388 SNP 101.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894101 TOG 2,231,799 - 2,236,312 (cM) Automated name-based, Automated name-based View Maps
TOG894103 TOG 7,957,652 - 7,962,751 soybean - GmJGI8x - Gm18 TOG894103 TOG 52,906,140 - 52,909,962 (cM) Automated name-based View Maps
TOG894113 TOG 29,161,622 - 29,170,198 barrel medic - Mt3.0 - MtChr8 TOG904927 TOG 1,602,308 - 1,607,592 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG895961 TOG 1,602,308 - 1,607,592 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894113 TOG 1,602,308 - 1,607,592 (cM) Automated name-based, Automated name-based View Maps
TOG894126 TOG 30,556,628 - 30,735,295 No other positions
TOG894200 TOG 2,993,161 - 2,995,456 lotus - LjKazusa200905 - LjChr3 TOG894200 TOG 66,397,778 - 66,410,098 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG909801 TOG 66,397,778 - 66,410,098 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG909801 TOG 6,085,412 - 6,118,658 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894200 TOG 6,085,412 - 6,118,658 (cM) Automated name-based, Automated name-based View Maps
TOG894211 TOG 34,566,280 - 34,570,866 lotus - LjKazusa200905 - LjChr3 TOG894211 TOG 11,293,645 - 11,297,781 (cM) Automated name-based, Automated name-based View Maps
TOG894225 TOG 30,556,628 - 30,735,295 lotus - LjKazusa200905 - LjChr3 TOG894225 TOG 13,682,410 - 13,685,097 (cM) Automated name-based, Automated name-based View Maps
TOG894263 TOG 35,303,825 - 35,310,427 chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894263 SNP 35.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG894263 TOG 38,158,681 - 38,168,019 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894263 TOG 24,206,567 - 24,208,720 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894263_635 SNP 19.8 (cM) Automated name-based, Automated name-based View Maps
TOG894279 TOG 31,507,790 - 31,514,616 barrel medic - Mt3.0 - MtChr8 TOG894279 TOG 1,299,797 - 1,306,392 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG894279 TOG 13,500,907 - 13,505,483 (cM) Automated name-based, Automated name-based View Maps
TOG894454 TOG 32,738,524 - 32,748,171 peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG894454_2 SNP 46.66 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894454 TOG 27,423,855 - 27,438,804 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP13 SNP 67.279 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_109_TOG894454_2_197 SNP 57.45 (cM) Automated name-based, Automated name-based View Maps
TOG894489 TOG 43,550,392 - 43,555,198 No other positions
TOG894612 TOG 41,059,056 - 41,063,411 lotus - LjKazusa200905 - LjChr1 TOG894612 TOG 74,631,795 - 74,632,890 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894612 SNP 51 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894612 TOG 28,310,804 - 28,318,465 (cM) Automated name-based, Automated name-based View Maps
TOG894773 TOG 7,957,652 - 7,962,751 soybean - GmJGI8x - Gm18 TOG894773 TOG 52,906,140 - 52,909,962 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894773 SNP 39.2 (cM) Automated name-based, Automated name-based View Maps
TOG894920 TOG 35,175,786 - 35,184,303 lotus - LjKazusa200905 - LjChr1 TOG894920 TOG 67,208,471 - 67,216,874 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 4_277_TOG894920_1_36 SNP 28.13 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894920 TOG 24,064,394 - 24,070,554 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894920 SNP 35.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894920_127 SNP 20.4 (cM) Automated name-based, Automated name-based View Maps
TOG895135 TOG 9,132,200 - 9,134,254 barrel medic - Mt3.0 - MtChr4 TOG895135 TOG 2,393,432 - 2,395,935 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG895135 TOG 38,692,765 - 38,743,686 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895135 TOG 33,000,141 - 33,002,202 (cM) Automated name-based, Automated name-based View Maps
TOG895526 TOG 43,487,062 - 43,493,130 lotus - LjKazusa200905 - LjChr1 TOG895526 TOG 79,291,497 - 79,304,367 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895526 TOG 14,782,804 - 14,787,465 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG895526 TOG 45,975,367 - 45,977,280 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG895526 TOG 27,542,474 - 27,546,048 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG895526 TOG 18,972,887 - 18,977,054 (cM) Automated name-based View Maps
TOG895586 TOG 8,126,135 - 8,128,802 barrel medic - Mt3.0 - MtChr4 TOG895586 TOG 2,451,799 - 2,455,567 (cM) Automated name-based, Automated name-based View Maps
TOG895724 TOG 35,095,569 - 35,097,072 lotus - LjKazusa200905 - LjChr1 TOG895724 TOG 67,258,815 - 67,261,684 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG895724 SNP 53.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG895724_591 SNP 21 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_178_TOG895724_1_427 SNP 48.67 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG895724 TOG 24,030,291 - 24,033,021 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG895724_478 SNP 21 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG895724 SNP 35.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG895724 TOG 37,957,706 - 37,960,560 (cM) Automated name-based View Maps
TOG895746 TOG 890,685 - 892,533 lotus - LjKazusa200905 - LjChr3 TOG895746 TOG 6,948,794 - 6,951,801 (cM) Automated name-based, Automated name-based View Maps