LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm08
Map Start: 0 cM
Map Stop: 46,995,532 cM
Features by Type:
234 Marker
321 SNP
122 SSR
170 TOG
847 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 847.       of 34 | Next
soybean - GmJGI8x - Gm08
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893948 TOG 5,764,883 - 5,765,728 lotus - LjKazusa200905 - LjChr4 TOG893948 TOG 5,659,688 - 5,675,496 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG893948 TOG 1,511,469 - 1,512,738 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG893948 TOG 67,953,031 - 67,954,031 (cM) Automated name-based, Automated name-based View Maps
TOG893951 TOG 15,340,953 - 15,344,170 lotus - LjKazusa200905 - LjChr6 TOG893951 TOG 43,632,068 - 43,639,840 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG893951 TOG 6,437,645 - 6,440,939 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG893951 TOG 5,628,141 - 5,630,852 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG893951 TOG 15,642,912 - 15,646,232 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG893951 TOG 544,970 - 548,198 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG893951 TOG 42,366,711 - 42,369,725 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG893951 TOG 13,068,845 - 28,502,898 (cM) Automated name-based, Automated name-based View Maps
TOG893993 TOG 3,571,010 - 3,572,400 barrel medic - Mt3.0 - MtChr6 TOG893993 TOG 5,181,391 - 5,184,351 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG928940 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894161 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG893993 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG893993 TOG 38,924,803 - 38,926,762 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG893993 TOG 8,636,128 - 8,638,447 (cM) Automated name-based View Maps
TOG894017 TOG 4,007,441 - 4,009,512 soybean - GmJGI8x - Gm05 TOG894017 TOG 38,511,252 - 38,513,182 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894017 TOG 38,379,552 - 38,381,869 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894017 TOG 68,125,390 - 68,127,445 (cM) Automated name-based, Automated name-based View Maps
TOG894054 TOG 1,807,853 - 1,810,584 lotus - LjKazusa200905 - LjChr4 TOG894054 TOG 63,642,039 - 63,644,615 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894054 TOG 40,639,286 - 40,642,227 (cM) Automated name-based View Maps
TOG894066 TOG 1,858,698 - 1,865,068 lotus - LjKazusa200905 - LjChr4 TOG894414 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894066 TOG 59,349,360 - 59,351,435 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG902550 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894066 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG895638 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
TOG894076 TOG 18,115,419 - 18,123,162 lotus - LjKazusa200905 - LjChr0 TOG896666 TOG 36,372,932 - 36,378,918 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG908356 TOG 36,372,932 - 36,378,918 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894076 TOG 36,372,932 - 36,378,918 (cM) Automated name-based, Automated name-based View Maps
TOG894117 TOG 8,865,720 - 8,870,344 No other positions
TOG894129 TOG 1,858,698 - 1,865,068 lotus - LjKazusa200905 - LjChr4 TOG894129 TOG 63,617,187 - 63,690,799 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894414 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894129 TOG 54,543,754 - 54,546,769 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894129 TOG 59,349,360 - 59,354,256 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG902550 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894066 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG895638 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894129 TOG 40,588,095 - 40,594,512 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894129 TOG 1,944,972 - 1,947,561 (cM) Automated name-based, Automated name-based View Maps
TOG894161 TOG 3,571,010 - 3,572,400 soybean - GmJGI8x - Gm05 TOG894161 TOG 38,924,803 - 38,926,762 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG894161 TOG 8,636,128 - 8,638,447 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG928940 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894161 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG893993 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr6 TOG894161 TOG 5,181,391 - 5,184,351 (cM) Automated name-based, Automated name-based View Maps
TOG894196 TOG 17,382,502 - 17,384,816 cowpea - VuCookUCDavis2009 - VuLG03 3_088_TOG894196_2_558 SNP 20.42 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894196 TOG 36,702,804 - 36,764,098 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG894196 SNP 41.2 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr8 Ca_TOG894196 SNP 69.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894196 TOG 28,432,757 - 28,437,579 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG894196 TOG 26,626,673 - 26,628,881 (cM) Automated name-based View Maps
TOG894220 TOG 12,505,904 - 12,511,227 No other positions
TOG894257 TOG 3,840,168 - 3,841,459 cowpea - VuCookUCDavis2009 - VuLG03 3_050_TOG894257_1_451 SNP 110.39 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG894257_1 SNP 124.78 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG03 Cc_TOG894257_403 SNP 33 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP7 SNP 109.98 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894257 TOG 38,634,736 - 38,639,597 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894257 TOG 67,949,314 - 67,952,650 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894257 TOG 38,656,034 - 38,659,405 (cM) Automated name-based View Maps
TOG894270 TOG 6,350,813 - 6,355,799 lotus - LjKazusa200905 - LjChr4 TOG894281 TOG 4,750,042 - 4,755,597 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG894270 SNP 70.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894270 TOG 31,989,942 - 32,012,985 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894270 TOG 4,750,029 - 4,755,599 (cM) Automated name-based, Automated name-based View Maps
TOG894281 TOG 6,350,813 - 6,355,799 lotus - LjKazusa200905 - LjChr4 TOG894281 TOG 4,750,042 - 4,755,597 (cM) Automated name-based, Automated name-based View Maps
TOG894287 TOG 8,865,720 - 8,870,344 peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP8 SNP 138.853 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG894287_2 SNP 168.74 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_347_TOG894287_2_435 SNP 82.22 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894287 TOG 32,453,673 - 32,458,558 (cM) Automated name-based, Automated name-based View Maps
TOG894318 TOG 2,253,217 - 2,257,252 soybean - GmJGI8x - Gm05 TOG894318 TOG 40,220,111 - 40,222,535 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894318 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894318 TOG 40,997,850 - 41,000,334 (cM) Automated name-based, Automated name-based View Maps
TOG894342 TOG 8,087,486 - 8,089,540 barrel medic - Mt3.0 - MtChr3 TOG894342 TOG 25,769,240 - 25,771,717 (cM) Automated name-based, Automated name-based View Maps
TOG894397 TOG 2,593,255 - 2,595,152 lotus - LjKazusa200905 - LjChr4 TOG943383 TOG 65,766,967 - 65,769,039 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894397 TOG 65,766,872 - 65,769,042 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894397 TOG 40,510,984 - 40,512,918 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG943383 TOG 40,510,984 - 40,512,918 (cM) Automated name-based, Automated name-based View Maps
TOG894414 TOG 1,858,698 - 1,865,068 lotus - LjKazusa200905 - LjChr4 TOG894414 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894414 TOG 59,351,121 - 59,354,256 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894414 TOG 54,543,754 - 54,546,769 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG902550 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894066 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG895638 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894414 TOG 1,944,972 - 1,947,561 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894414 TOG 40,588,095 - 40,594,512 (cM) Automated name-based View Maps
TOG894460 TOG 5,523,825 - 5,526,243 No other positions
TOG894493 TOG 44,784,942 - 44,788,013 lotus - LjKazusa200905 - LjChr1 TOG924092 TOG 58,110,946 - 58,113,209 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG928623 TOG 1,294,514 - 1,296,343 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894493 TOG 58,110,946 - 58,113,209 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894493 TOG 1,294,514 - 1,296,343 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG928623 TOG 58,110,946 - 58,113,209 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG924092 TOG 1,294,514 - 1,296,343 (cM) Automated name-based, Automated name-based View Maps
TOG894619 TOG 13,903,709 - 13,906,435 lotus - LjKazusa200905 - LjChr3 TOG894619 TOG 18,254,684 - 18,257,335 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894619 TOG 17,498,895 - 17,501,279 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG894619 SNP 88.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG894619 SNP 35 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG894619_735 SNP 45.7 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG894619_593 SNP 45.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG894619_1 SNP 63.59 (cM) Automated name-based, Automated name-based View Maps
TOG894638 TOG 44,315,884 - 44,333,178 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG894638_470 SNP 33.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894638 TOG 18,889,396 - 18,895,117 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894638 TOG 6,814,948 - 6,821,939 (cM) Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP14 SNP 25.416 (cM) Automated name-based, Automated name-based View Maps
TOG894700 TOG 39,808,721 - 39,810,815 barrel medic - Mt3.0 - MtChr4 TOG894700 TOG 38,118,785 - 38,120,185 (cM) Automated name-based, Automated name-based View Maps