LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set barrel medic-Mt3.0
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps MtChr1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
EST
Marker
SNP
SSR
SSR-enriched-cDNA
SSR-enriched-genomic
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: barrel medic - Mt3.0 [ View Map Set Info ]
Map Name: MtChr1
Map Start: 0 cM
Map Stop: 33,137,576 cM
Features by Type:
14 CAPS
3 EST
133 Marker
2 SNP
108 SSR
3 SSR-enriched-cDNA
4 SSR-enriched-genomic
138 TOG
405 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 405.       of 17 | Next
barrel medic - Mt3.0 - MtChr1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893946 TOG 21,209,942 - 21,213,711 soybean - GmJGI8x - Gm20 TOG893946 TOG 32,546,284 - 32,550,477 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG893946 TOG 37,420,847 - 37,425,210 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG945378 TOG 37,420,847 - 37,425,210 (cM) Automated name-based, Automated name-based View Maps
TOG893961 TOG 20,607,851 - 20,609,894 soybean - GmJGI8x - Gm10 TOG893961 TOG 38,072,039 - 38,074,049 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG893961 TOG 32,970,422 - 32,973,090 (cM) Automated name-based View Maps
TOG894000 TOG 23,076,499 - 23,078,083 soybean - GmJGI8x - Gm02 TOG894000 TOG 1,538,670 - 1,539,877 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894000 TOG 39,389,255 - 39,390,737 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894000 TOG 1,586,538 - 1,588,516 (cM) Automated name-based, Automated name-based View Maps
TOG894039 TOG 29,734,675 - 29,736,944 lotus - LjKazusa200905 - LjChr0 TOG894039 TOG 1,068,518 - 1,071,783 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG894039 TOG 37,158,160 - 37,160,227 (cM) Automated name-based, Automated name-based View Maps
TOG894060 TOG 26,552,691 - 26,556,977 barrel medic - Mt3.0 - MtChr8 TOG894060 TOG 6,010,545 - 6,012,502 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894060 TOG 1,351,632 - 1,355,453 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG894060 SNP 30 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894060_142 SNP 109.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_122_TOG894060_2_377 SNP 22.96 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG894060 TOG 47,617,917 - 47,620,062 (cM) Automated name-based, Automated name-based View Maps
TOG894165 TOG 8,819,291 - 8,821,144 soybean - GmJGI8x - Gm06 TOG898233 TOG 9,166,802 - 9,167,729 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894165 TOG 24,325,184 - 24,330,690 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG894165 TOG 9,164,325 - 9,167,729 (cM) Automated name-based, Automated name-based View Maps
TOG894224 TOG 20,770,604 - 20,773,165 soybean - GmJGI8x - Gm20 TOG894224 TOG 45,938,652 - 45,943,678 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG894224 SNP 27.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894224 TOG 37,897,249 - 37,900,132 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894224 TOG 32,721,557 - 32,726,548 (cM) Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP5 SNP 56.733 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894224_897 SNP 97.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894224_121 SNP 97.8 (cM) Automated name-based, Automated name-based View Maps
TOG894307 TOG 26,464,352 - 26,466,317 soybean - GmJGI8x - Gm20 TOG894307 TOG 40,509,434 - 40,512,082 (cM) Automated name-based, Automated name-based View Maps
TOG894357 TOG 21,449,440 - 21,456,911 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG894357 SNP 36.3 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894357 TOG 35,625,095 - 35,626,499 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG894357_2 SNP 76.85 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A09 TOG894357 SNP 24.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894357 TOG 36,984,562 - 36,989,676 (cM) Automated name-based, Automated name-based View Maps
TOG894379 TOG 5,452,934 - 5,457,621 soybean - GmJGI8x - Gm14 TOG894379 TOG 7,512,950 - 7,517,219 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894379 TOG 3,879,425 - 3,912,672 (cM) Automated name-based, Automated name-based View Maps
TOG894402 TOG 23,076,499 - 23,078,083 soybean - GmJGI8x - Gm02 TOG894402 TOG 1,538,670 - 1,539,877 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894402 TOG 1,586,538 - 1,588,516 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894402 TOG 39,389,255 - 39,390,737 (cM) Automated name-based, Automated name-based View Maps
TOG894496 TOG 26,129,937 - 26,133,482 soybean - GmJGI8x - Gm10 TOG915521 TOG 43,763,966 - 43,766,762 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894496 TOG 43,763,966 - 43,766,762 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG895078 TOG 43,763,966 - 43,766,762 (cM) Automated name-based, Automated name-based View Maps
TOG894617 TOG 1,805,655 - 1,809,708 soybean - GmJGI8x - Gm14 TOG894617 TOG 20,040,017 - 20,043,348 (cM) Automated name-based, Automated name-based View Maps
TOG894968 TOG 14,729,906 - 14,750,025 lotus - LjKazusa200905 - LjChr0 TOG894968 TOG 19,727,745 - 19,733,517 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894968_904 SNP 141.5 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894968 SNP 30.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894968 TOG 6,185,947 - 6,191,914 (cM) Automated name-based, Automated name-based View Maps
TOG895078 TOG 26,129,937 - 26,133,482 soybean - GmJGI8x - Gm10 TOG915521 TOG 43,763,966 - 43,766,762 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894496 TOG 43,763,966 - 43,766,762 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG895078 TOG 43,763,966 - 43,766,762 (cM) Automated name-based, Automated name-based View Maps
TOG895163 TOG 5,062,377 - 5,067,564 soybean - GmJGI8x - Gm07 TOG895163 TOG 779,130 - 783,160 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG895163 TOG 5,956,968 - 5,962,924 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG895163 TOG 64,676,756 - 64,680,685 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG895163 SNP 36.4 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895163 SNP 100 (cM) Automated name-based, Automated name-based View Maps
TOG895440 TOG 9,266,476 - 9,271,960 lotus - LjKazusa200905 - LjChr2 TOG895440 TOG 1,287,736 - 1,293,605 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG895440 TOG 20,597,384 - 20,603,142 (cM) Automated name-based, Automated name-based View Maps
TOG895535 TOG 26,730,998 - 26,734,562 lotus - LjKazusa200905 - LjChr0 TOG895535 TOG 3,945,776 - 3,948,079 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_176_TOG895535_2_219 SNP 54.55 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895535 SNP 55.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG895535 TOG 40,401,354 - 40,405,078 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895535 SNP 50.7 (cM) Automated name-based, Automated name-based View Maps
TOG895538 TOG 27,895,061 - 27,897,994 cowpea - VuCookUCDavis2009 - VuLG10 4_078_TOG895538_1_457 SNP 57.54 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895538 TOG 50,877,601 - 50,880,749 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG895538 SNP 14.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG895538 TOG 39,091,535 - 39,093,319 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG895538 TOG 45,239,967 - 45,242,645 (cM) Automated name-based, Automated name-based View Maps
TOG895578 TOG 28,907,215 - 28,911,751 soybean - GmJGI8x - Gm10 TOG895578 TOG 46,202,370 - 46,206,618 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP28 SNP 49.943 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895578_769 SNP 191.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A09 TOG895578 SNP 33.3 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895578 SNP 57.6 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_132_TOG895578_1_214 SNP 60.49 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895578 SNP 62.6 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895578 TOG 34,696,090 - 34,698,513 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_363_TOG895578_1_79 SNP 60.49 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895578_782 SNP 191.8 (cM) Automated name-based, Automated name-based View Maps
TOG895801 TOG 23,076,499 - 23,078,083 No other positions
TOG895846 TOG 21,138,665 - 21,141,536 common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895846 SNP 36.4 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895846 SNP 35.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG895846 TOG 32,638,948 - 32,641,718 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG895846_483 SNP 94.6 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895846 TOG 34,364,630 - 34,384,637 (cM) Automated name-based, Automated name-based View Maps
TOG895877 TOG 22,014,868 - 22,017,693 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895877_393 SNP 161.4 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895877 SNP 37.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG895877_1 SNP 76.85 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895877 TOG 36,018,187 - 36,021,227 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP36 SNP 57.878 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895877 SNP 35.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895877_53 SNP 161.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_281_TOG895877_1_570 SNP 34.33 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG895877 TOG 893,562 - 897,109 (cM) Automated name-based, Automated name-based View Maps
TOG895897 TOG 11,931,668 - 11,934,036 lotus - LjKazusa200905 - LjChr6 TOG895897 TOG 1,240,462 - 1,247,044 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG895897 TOG 23,983,553 - 23,990,015 (cM) Automated name-based, Automated name-based View Maps
TOG895983 TOG 13,193,763 - 13,202,569 common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895983 SNP 27.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP37 SNP 2.278 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895983_215 SNP 123.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG895983_1 SNP 36.01 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG895983 TOG 49,545,281 - 49,553,460 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 TOG895983 SNP 126.3 (cM) Automated name-based, Automated name-based View Maps