LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set barrel medic-Mt3.0
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps MtChr6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: barrel medic - Mt3.0 [ View Map Set Info ]
Map Name: MtChr6
Map Start: 0 cM
Map Stop: 22,629,075 cM
Features by Type:
13 CAPS
52 Marker
1 SNP
46 SSR
39 TOG
151 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 151.       of 7 | Next
barrel medic - Mt3.0 - MtChr6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893993 TOG 5,181,391 - 5,184,351 soybean - GmJGI8x - Gm08 TOG893993 TOG 3,571,010 - 3,572,400 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG893993 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG893993 TOG 38,924,803 - 38,926,762 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG893993 TOG 8,636,128 - 8,638,447 (cM) Automated name-based, Automated name-based View Maps
TOG894161 TOG 5,181,391 - 5,184,351 soybean - GmJGI8x - Gm05 TOG894161 TOG 38,924,803 - 38,926,762 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG894161 TOG 8,636,128 - 8,638,447 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894161 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894161 TOG 3,571,010 - 3,572,400 (cM) Automated name-based, Automated name-based View Maps
TOG894265 TOG 6,917,702 - 6,921,562 pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG894265_45 SNP 39.8 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG894265 SNP 53.2 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894265 SNP 34.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894265 TOG 3,843,777 - 3,848,208 (cM) Automated name-based, Automated name-based View Maps
TOG894556 TOG 6,917,702 - 6,921,562 soybean - GmJGI8x - Gm16 TOG894556 TOG 3,843,777 - 3,848,208 (cM) Automated name-based, Automated name-based View Maps
TOG894784 TOG 21,990,899 - 21,994,397 soybean - GmJGI8x - Gm09 TOG894784 TOG 38,965,315 - 38,970,156 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG905629 TOG 38,965,315 - 38,970,156 (cM) Automated name-based, Automated name-based View Maps
TOG894928 TOG 16,289,543 - 16,294,288 lotus - LjKazusa200905 - LjChr2 TOG894928 TOG 13,727,248 - 13,790,797 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894928 TOG 20,767,395 - 20,771,242 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894928 TOG 35,361,252 - 35,365,531 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG894928 TOG 7,167,147 - 7,171,269 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG894928 TOG 10,041,424 - 10,046,548 (cM) Automated name-based, Automated name-based View Maps
TOG895492 TOG 16,926,700 - 16,929,451 cowpea - VuCookUCDavis2009 - VuLG05 4_166_TOG895492_2_412 SNP 33.86 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG895492_1 SNP 34.77 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG895492 TOG 37,440,143 - 37,442,720 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG895492_228 SNP 13.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 4_018_TOG895492_2_866 SNP 33.86 (cM) Automated name-based, Automated name-based View Maps
TOG895547 TOG 5,153,937 - 5,157,646 soybean - GmJGI8x - Gm05 TOG895547 TOG 30,322,491 - 37,560,611 (cM) Automated name-based, Automated name-based View Maps
TOG895759 TOG 22,161,092 - 22,164,871 soybean - GmJGI8x - Gm09 TOG895759 TOG 38,925,674 - 38,927,699 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG895759_1 SNP 34.44 (cM) Automated name-based, Automated name-based View Maps
TOG896164 TOG 5,181,391 - 5,184,351 soybean - GmJGI8x - Gm05 TOG896164 TOG 38,924,803 - 38,926,762 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG03 Cc_TOG896164_344 SNP 29.9 (cM) Automated name-based, Automated name-based View Maps
TOG896491 TOG 6,476,178 - 6,482,565 soybean - GmJGI8x - Gm19 TOG896491 TOG 48,873,374 - 48,876,865 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG896491 SNP 25.7 (cM) Automated name-based, Automated name-based View Maps
TOG897631 TOG 13,048,068 - 13,052,476 cowpea - VuCookUCDavis2009 - VuLG05 3_096_TOG897631_2_147 SNP 12.67 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG897631 TOG 35,169,338 - 35,171,172 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG897631 TOG 36,083,445 - 36,085,838 (cM) Automated name-based, Automated name-based View Maps
TOG898093 TOG 5,153,937 - 5,157,646 soybean - GmJGI8x - Gm05 TOG898093 TOG 30,322,491 - 30,327,821 (cM) Automated name-based, Automated name-based View Maps
TOG898271 TOG 16,904,954 - 16,913,420 cowpea - VuCookUCDavis2009 - VuLG05 4_040_TOG898271_2_649 SNP 33.86 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG898271_650 SNP 13.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG898271 TOG 9,803,065 - 9,813,668 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG898271_2 SNP 48.29 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG898271 SNP 55.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 4_184_TOG898271_2_640 SNP 33.86 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG898271 SNP 35.9 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG898271_702 SNP 13.3 (cM) Automated name-based, Automated name-based View Maps
TOG898353 TOG 12,955,781 - 12,968,960 soybean - GmJGI8x - Gm09 TOG898353 TOG 35,119,057 - 35,125,649 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP86 SNP 53.723 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 3_227_TOG898353_2_348 SNP 12.67 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG898353 SNP 24.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG898353_2 SNP 23.91 (cM) Automated name-based, Automated name-based View Maps
TOG899617 TOG 20,235,945 - 20,243,838 peanut - AA_A.duranensis_x_A.stenosperma_e - LG15 Ah2n_TOG899617_1 SNP 32.94 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG899617 TOG 14,072,456 - 14,091,481 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG899617 SNP 43.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG899617 TOG 37,702,547 - 37,716,076 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 4_236_TOG899617_1_1109 SNP 49.89 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 SNP107 SNP 8.889 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TOG899617 SNP 78.9 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG899617 TOG 8,474,846 - 8,492,783 (cM) Automated name-based, Automated name-based View Maps
TOG899919 TOG 469,454 - 473,681 barrel medic - Mt3.0 - MtChr1 TOG899919 TOG 22,067,169 - 22,069,631 (cM) Automated name-based View Maps
TOG900140 TOG 19,132,053 - 19,139,798 pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG900140_286 SNP 19.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG900140 SNP 29 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 3_257_TOG900140_2_282 SNP 25.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG16 Ah2n_TOG900140_2 SNP 14.71 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG900140 TOG 36,838,905 - 36,846,456 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TOG900140 SNP 46 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 SNP119 SNP 58.588 (cM) Automated name-based, Automated name-based View Maps
TOG901708 TOG 6,437,638 - 6,442,760 soybean - GmJGI8x - Gm07 TOG901708 TOG 8,577,054 - 8,582,886 (cM) Automated name-based, Automated name-based View Maps
TOG901711 TOG 19,465,858 - 19,469,789 common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG901711 SNP 53.8 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG901711 SNP 64.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG901711 TOG 15,317,941 - 15,323,013 (cM) Automated name-based, Automated name-based View Maps
TOG902056 TOG 19,151,502 - 19,157,746 No other positions
TOG902768 TOG 17,227,965 - 17,232,822 soybean - GmJGI8x - Gm09 TOG902768 TOG 35,942,462 - 35,945,949 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG902768 TOG 9,827,775 - 9,831,063 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG902768_1 SNP 26.47 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG902768_1035 SNP 22.5 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG902768 SNP 52.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG902768 SNP 26.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP144 SNP 53.087 (cM) Automated name-based, Automated name-based View Maps
TOG904987 TOG 6,167,408 - 6,170,737 barrel medic - Mt3.0 - MtChr4 TOG904987 TOG 39,525,155 - 39,529,341 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG904987 TOG 8,683,370 - 8,686,557 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG904988 TOG 8,683,370 - 8,686,557 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG904987 TOG 38,954,507 - 38,956,696 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG904987 TOG 67,291,372 - 67,299,930 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG904987_1 SNP 41.37 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG904988 TOG 67,291,660 - 67,299,930 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP161 SNP 40.75 (cM) Automated name-based, Automated name-based View Maps
TOG904988 TOG 6,167,408 - 6,170,737 soybean - GmJGI8x - Gm05 TOG904988 TOG 38,954,507 - 38,956,696 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG904988 TOG 39,525,155 - 39,529,341 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG904987 TOG 8,683,370 - 8,686,557 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG904988 TOG 8,683,370 - 8,686,557 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG904988 TOG 67,291,660 - 67,299,930 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG904988_2 SNP 40.65 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP162 SNP 40.75 (cM) Automated name-based, Automated name-based View Maps
TOG905629 TOG 21,990,522 - 21,994,823 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP170 SNP 42.614 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG905629 TOG 38,965,315 - 38,970,156 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG905629 SNP 48.2 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 4_211_TOG905629_1_360 SNP 42.85 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG905629 TOG 7,809,142 - 7,813,325 (cM) Automated name-based, Automated name-based View Maps